Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21386 | 5' | -52.3 | NC_004812.1 | + | 108192 | 0.66 | 0.975572 |
Target: 5'- -aAGGCGC-GCUaCGAGCGGagccugGCGCUc -3' miRNA: 3'- ugUUCGUGaUGAaGCUCGCCa-----CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 105213 | 0.66 | 0.982479 |
Target: 5'- gGCGAGCGCg----CcGGCGGccgGCGCCu -3' miRNA: 3'- -UGUUCGUGaugaaGcUCGCCa--CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 116972 | 0.66 | 0.982479 |
Target: 5'- uCGGGCugU-CgguggCGuGCGuGUGCACCa -3' miRNA: 3'- uGUUCGugAuGaa---GCuCGC-CACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 20193 | 0.66 | 0.978065 |
Target: 5'- aGCGGGCGCguCUUCGAGaGGacgcacgugGCGCCc -3' miRNA: 3'- -UGUUCGUGauGAAGCUCgCCa--------CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 136249 | 0.66 | 0.984418 |
Target: 5'- cACAAGCGCgACUUU--GCGGagGCGCg -3' miRNA: 3'- -UGUUCGUGaUGAAGcuCGCCa-CGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 10555 | 0.66 | 0.985146 |
Target: 5'- cACGcGCGuuCUGCgugccggCGAGCGGUGCcgggggcauuuaugcGCCg -3' miRNA: 3'- -UGUuCGU--GAUGaa-----GCUCGCCACG---------------UGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 152938 | 0.66 | 0.978065 |
Target: 5'- nCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3' miRNA: 3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 135610 | 0.66 | 0.980365 |
Target: 5'- -gGGGCGCacgcGCUUCGuGCaccuGGUGCugCu -3' miRNA: 3'- ugUUCGUGa---UGAAGCuCG----CCACGugG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 145037 | 0.66 | 0.982479 |
Target: 5'- gGCGAGCGCggagGCgg-GGGCGGcgGCggACCu -3' miRNA: 3'- -UGUUCGUGa---UGaagCUCGCCa-CG--UGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 129705 | 0.66 | 0.976593 |
Target: 5'- gGCAGGUGCUGCUggaGGUGGUGgugagcgcguacggaCGCCg -3' miRNA: 3'- -UGUUCGUGAUGAagcUCGCCAC---------------GUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 115432 | 0.66 | 0.982479 |
Target: 5'- cCGAGCG--ACgUUgGGGCGGcGCGCCg -3' miRNA: 3'- uGUUCGUgaUG-AAgCUCGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 71237 | 0.66 | 0.975572 |
Target: 5'- -aGGGCGCggcggggACggCG-GCGGUGgGCCg -3' miRNA: 3'- ugUUCGUGa------UGaaGCuCGCCACgUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 107627 | 0.66 | 0.975572 |
Target: 5'- gGC-GGCGC-AUUUUGGcGCGGUGgGCCu -3' miRNA: 3'- -UGuUCGUGaUGAAGCU-CGCCACgUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 73221 | 0.66 | 0.975572 |
Target: 5'- cGCGGccGCcCUGCgggUCGGGCGGgcgGC-CCg -3' miRNA: 3'- -UGUU--CGuGAUGa--AGCUCGCCa--CGuGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 39551 | 0.66 | 0.975572 |
Target: 5'- uGCGGGCcgucGCggGCgaUGAGCGGcuggUGCACCu -3' miRNA: 3'- -UGUUCG----UGa-UGaaGCUCGCC----ACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 5826 | 0.66 | 0.980365 |
Target: 5'- gGCGGGCuCUGCgggCcGGCGGcGCGCUc -3' miRNA: 3'- -UGUUCGuGAUGaa-GcUCGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 145948 | 0.66 | 0.978065 |
Target: 5'- --uGGCGCUGCgcUGGguGCGGgGCACCc -3' miRNA: 3'- uguUCGUGAUGaaGCU--CGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 130008 | 0.66 | 0.978065 |
Target: 5'- aGCAGGCGCggucgaGCUccacgUCGccGGCGGUGaCGCg -3' miRNA: 3'- -UGUUCGUGa-----UGA-----AGC--UCGCCAC-GUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 16909 | 0.66 | 0.975572 |
Target: 5'- cCAGGCGCUGCUgCGcauGGCcugcgaGGUGCGgCa -3' miRNA: 3'- uGUUCGUGAUGAaGC---UCG------CCACGUgG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 119877 | 0.66 | 0.975312 |
Target: 5'- gACGGGC-CUGCacccCGGggucgccuucaccGUGGUGCGCCa -3' miRNA: 3'- -UGUUCGuGAUGaa--GCU-------------CGCCACGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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