miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 145948 0.66 0.978065
Target:  5'- --uGGCGCUGCgcUGGguGCGGgGCACCc -3'
miRNA:   3'- uguUCGUGAUGaaGCU--CGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 141275 0.66 0.97505
Target:  5'- cCAGGCGCUGCgucacuucccccUCGcGCGGccUGCGCa -3'
miRNA:   3'- uGUUCGUGAUGa-----------AGCuCGCC--ACGUGg -5'
21386 5' -52.3 NC_004812.1 + 103474 0.66 0.984418
Target:  5'- cCAGGCGCgccgUCucGCGGUaGUACCg -3'
miRNA:   3'- uGUUCGUGaugaAGcuCGCCA-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 95494 0.66 0.980365
Target:  5'- cGCGGGCGCcgGCgcgccGCGGgGCGCCg -3'
miRNA:   3'- -UGUUCGUGa-UGaagcuCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 39551 0.66 0.975572
Target:  5'- uGCGGGCcgucGCggGCgaUGAGCGGcuggUGCACCu -3'
miRNA:   3'- -UGUUCG----UGa-UGaaGCUCGCC----ACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 16909 0.66 0.975572
Target:  5'- cCAGGCGCUGCUgCGcauGGCcugcgaGGUGCGgCa -3'
miRNA:   3'- uGUUCGUGAUGAaGC---UCG------CCACGUgG- -5'
21386 5' -52.3 NC_004812.1 + 107627 0.66 0.975572
Target:  5'- gGC-GGCGC-AUUUUGGcGCGGUGgGCCu -3'
miRNA:   3'- -UGuUCGUGaUGAAGCU-CGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 71237 0.66 0.975572
Target:  5'- -aGGGCGCggcggggACggCG-GCGGUGgGCCg -3'
miRNA:   3'- ugUUCGUGa------UGaaGCuCGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 15885 0.66 0.980365
Target:  5'- uGCGcGC-CUACcUCGAcgagGCGGggggGCACCu -3'
miRNA:   3'- -UGUuCGuGAUGaAGCU----CGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 73221 0.66 0.975572
Target:  5'- cGCGGccGCcCUGCgggUCGGGCGGgcgGC-CCg -3'
miRNA:   3'- -UGUU--CGuGAUGa--AGCUCGCCa--CGuGG- -5'
21386 5' -52.3 NC_004812.1 + 122037 0.66 0.978065
Target:  5'- nCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3'
miRNA:   3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 108552 0.66 0.980365
Target:  5'- gGCGAGuCGCUGCgcUCGcuGGUGGcgcGCGCCc -3'
miRNA:   3'- -UGUUC-GUGAUGa-AGC--UCGCCa--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 10555 0.66 0.985146
Target:  5'- cACGcGCGuuCUGCgugccggCGAGCGGUGCcgggggcauuuaugcGCCg -3'
miRNA:   3'- -UGUuCGU--GAUGaa-----GCUCGCCACG---------------UGG- -5'
21386 5' -52.3 NC_004812.1 + 20281 0.66 0.980365
Target:  5'- gACGAGguCgggggUGGGCGGcGCGCCg -3'
miRNA:   3'- -UGUUCguGaugaaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 128970 0.66 0.982479
Target:  5'- uCGGGCcCgg---CGGGCGGUcGCGCCg -3'
miRNA:   3'- uGUUCGuGaugaaGCUCGCCA-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 5826 0.66 0.980365
Target:  5'- gGCGGGCuCUGCgggCcGGCGGcGCGCUc -3'
miRNA:   3'- -UGUUCGuGAUGaa-GcUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 134654 0.66 0.982479
Target:  5'- cGCGAGCACcACggCGuGGCGuGUG-ACCa -3'
miRNA:   3'- -UGUUCGUGaUGaaGC-UCGC-CACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 56570 0.66 0.982479
Target:  5'- gGCGcGCACgcGC-UCGAGCGcGgcgaugGCGCCg -3'
miRNA:   3'- -UGUuCGUGa-UGaAGCUCGC-Ca-----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 75950 0.66 0.982479
Target:  5'- cGCGGGUugUACUUguucUGcGCGGccaGCGCCu -3'
miRNA:   3'- -UGUUCGugAUGAA----GCuCGCCa--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 108192 0.66 0.975572
Target:  5'- -aAGGCGC-GCUaCGAGCGGagccugGCGCUc -3'
miRNA:   3'- ugUUCGUGaUGAaGCUCGCCa-----CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.