miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 1331 0.67 0.959953
Target:  5'- cGCGGGCGgU-CcgCGGGCGGUcCGCCg -3'
miRNA:   3'- -UGUUCGUgAuGaaGCUCGCCAcGUGG- -5'
21386 5' -52.3 NC_004812.1 + 3462 0.66 0.982479
Target:  5'- uCGGGCcCgg---CGGGCGGUcGCGCCg -3'
miRNA:   3'- uGUUCGuGaugaaGCUCGCCA-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 3577 0.74 0.693723
Target:  5'- gGCAGGCgGCggcgGCggCGGGCGGgcGCGCCg -3'
miRNA:   3'- -UGUUCG-UGa---UGaaGCUCGCCa-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 3903 0.67 0.96352
Target:  5'- cGCGGGCGCgGCggCGcGGCGGcgGgGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaaGC-UCGCCa-CgUGG- -5'
21386 5' -52.3 NC_004812.1 + 4500 0.66 0.978065
Target:  5'- aGCAGGCGCggucgaGCUccacgUCGccGGCGGUGaCGCg -3'
miRNA:   3'- -UGUUCGUGa-----UGA-----AGC--UCGCCAC-GUGg -5'
21386 5' -52.3 NC_004812.1 + 5826 0.66 0.980365
Target:  5'- gGCGGGCuCUGCgggCcGGCGGcGCGCUc -3'
miRNA:   3'- -UGUUCGuGAUGaa-GcUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 6790 0.71 0.86184
Target:  5'- gGCGAGCcgUGCcUCGGGgGGcGCGCCg -3'
miRNA:   3'- -UGUUCGugAUGaAGCUCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 8311 0.7 0.898066
Target:  5'- aGCGAGCGCaGCagCGGGCcg-GCGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaaGCUCGccaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 10555 0.66 0.985146
Target:  5'- cACGcGCGuuCUGCgugccggCGAGCGGUGCcgggggcauuuaugcGCCg -3'
miRNA:   3'- -UGUuCGU--GAUGaa-----GCUCGCCACG---------------UGG- -5'
21386 5' -52.3 NC_004812.1 + 12621 0.68 0.93853
Target:  5'- -gAAGaCGCcGCcgCGAGCGGUcgGCGCCu -3'
miRNA:   3'- ugUUC-GUGaUGaaGCUCGCCA--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 15885 0.66 0.980365
Target:  5'- uGCGcGC-CUACcUCGAcgagGCGGggggGCACCu -3'
miRNA:   3'- -UGUuCGuGAUGaAGCU----CGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 16909 0.66 0.975572
Target:  5'- cCAGGCGCUGCUgCGcauGGCcugcgaGGUGCGgCa -3'
miRNA:   3'- uGUUCGUGAUGAaGC---UCG------CCACGUgG- -5'
21386 5' -52.3 NC_004812.1 + 20193 0.66 0.978065
Target:  5'- aGCGGGCGCguCUUCGAGaGGacgcacgugGCGCCc -3'
miRNA:   3'- -UGUUCGUGauGAAGCUCgCCa--------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 20281 0.66 0.980365
Target:  5'- gACGAGguCgggggUGGGCGGcGCGCCg -3'
miRNA:   3'- -UGUUCguGaugaaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 20421 0.86 0.172998
Target:  5'- gGCAGGCGCUGCggUCGAuGUGGUGCGCg -3'
miRNA:   3'- -UGUUCGUGAUGa-AGCU-CGCCACGUGg -5'
21386 5' -52.3 NC_004812.1 + 27507 0.68 0.93853
Target:  5'- cACGAGCagggugGCcACgagcUCG-GCGGUGUACCa -3'
miRNA:   3'- -UGUUCG------UGaUGa---AGCuCGCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 32232 0.67 0.959953
Target:  5'- cGCGGGCGgU-CcgCGGGCGGUcCGCCg -3'
miRNA:   3'- -UGUUCGUgAuGaaGCUCGCCAcGUGG- -5'
21386 5' -52.3 NC_004812.1 + 32472 0.69 0.933504
Target:  5'- cACAGGCGCgugagGCgcggcccgUCG-GCGGcGUACCg -3'
miRNA:   3'- -UGUUCGUGa----UGa-------AGCuCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 36727 0.66 0.980365
Target:  5'- gGCGGGCuCUGCgggCcGGCGGcGCGCUc -3'
miRNA:   3'- -UGUUCGuGAUGaa-GcUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 36883 0.66 0.980365
Target:  5'- gGCGAGUAC-GCg--GGGUGGUagGCGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaagCUCGCCA--CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.