miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 8311 0.7 0.898066
Target:  5'- aGCGAGCGCaGCagCGGGCcg-GCGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaaGCUCGccaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 66550 0.7 0.869546
Target:  5'- cGCAGGCGCUgggcuccagucgGCggagggaCGAGCGGcUGCGCg -3'
miRNA:   3'- -UGUUCGUGA------------UGaa-----GCUCGCC-ACGUGg -5'
21386 5' -52.3 NC_004812.1 + 74862 0.7 0.869546
Target:  5'- aGCGAGCGCcGCa--GGGCGGccguccgGCGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaagCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 68170 0.7 0.877027
Target:  5'- gGCAGGguCggcgGCcgCGGGCGGgggcGCGCCg -3'
miRNA:   3'- -UGUUCguGa---UGaaGCUCGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 44334 0.7 0.884277
Target:  5'- gGCGGGCGCgGCccaGAGCGGcGCGCg -3'
miRNA:   3'- -UGUUCGUGaUGaagCUCGCCaCGUGg -5'
21386 5' -52.3 NC_004812.1 + 117268 0.7 0.884277
Target:  5'- cCGAGCGCUcCggCGGGCGGggGCGgCg -3'
miRNA:   3'- uGUUCGUGAuGaaGCUCGCCa-CGUgG- -5'
21386 5' -52.3 NC_004812.1 + 39016 0.7 0.891291
Target:  5'- -gAGGCGCUGCUUgauggGGGCGGUGgugacgagcaCGCCg -3'
miRNA:   3'- ugUUCGUGAUGAAg----CUCGCCAC----------GUGG- -5'
21386 5' -52.3 NC_004812.1 + 110027 0.7 0.89403
Target:  5'- -aGAGCGCguguagucccCGGGCGGUGCGCg -3'
miRNA:   3'- ugUUCGUGaugaa-----GCUCGCCACGUGg -5'
21386 5' -52.3 NC_004812.1 + 89840 0.7 0.898066
Target:  5'- cGCGGGUGCagGCgugCGAGuCGGUGC-CCg -3'
miRNA:   3'- -UGUUCGUGa-UGaa-GCUC-GCCACGuGG- -5'
21386 5' -52.3 NC_004812.1 + 6790 0.71 0.86184
Target:  5'- gGCGAGCcgUGCcUCGGGgGGcGCGCCg -3'
miRNA:   3'- -UGUUCGugAUGaAGCUCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 115211 0.71 0.853915
Target:  5'- cGCGAGgGCgagggGCgUUCGuggcguugggGGUGGUGCACCa -3'
miRNA:   3'- -UGUUCgUGa----UG-AAGC----------UCGCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 54033 0.71 0.845779
Target:  5'- -gGGGUugUACUUCaggucGGUGGUGUGCCa -3'
miRNA:   3'- ugUUCGugAUGAAGc----UCGCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 85381 0.76 0.609921
Target:  5'- cCGAGCugUGCUUCGGGCGcccggGgGCCg -3'
miRNA:   3'- uGUUCGugAUGAAGCUCGCca---CgUGG- -5'
21386 5' -52.3 NC_004812.1 + 129085 0.74 0.693723
Target:  5'- gGCAGGCgGCggcgGCggCGGGCGGgcGCGCCg -3'
miRNA:   3'- -UGUUCG-UGa---UGaaGCUCGCCa-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 108751 0.73 0.754542
Target:  5'- uGCAGGCGCUGCggcugggGGGCGcGgggGCGCCu -3'
miRNA:   3'- -UGUUCGUGAUGaag----CUCGC-Ca--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 99434 0.73 0.754542
Target:  5'- aACAuGUACUGCUggaGGCGGUGgACCg -3'
miRNA:   3'- -UGUuCGUGAUGAagcUCGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 117111 0.72 0.783549
Target:  5'- -gAGGCGCggcCUcCGGGCGGcGCGCCa -3'
miRNA:   3'- ugUUCGUGau-GAaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 93103 0.72 0.802185
Target:  5'- aGCGGGCGCUucGCggugUCGGGCGGcgGCGuCUg -3'
miRNA:   3'- -UGUUCGUGA--UGa---AGCUCGCCa-CGU-GG- -5'
21386 5' -52.3 NC_004812.1 + 79149 0.71 0.828899
Target:  5'- gGCuGGCGC-GCUUgGGGUGGUGUcgGCCg -3'
miRNA:   3'- -UGuUCGUGaUGAAgCUCGCCACG--UGG- -5'
21386 5' -52.3 NC_004812.1 + 78444 0.71 0.837437
Target:  5'- cGCGAGCACUcggucACcucgCGGGCGaugccggccucGUGCGCCg -3'
miRNA:   3'- -UGUUCGUGA-----UGaa--GCUCGC-----------CACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.