miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 135272 1.11 0.004746
Target:  5'- uACAAGCACUACUUCGAGCGGUGCACCc -3'
miRNA:   3'- -UGUUCGUGAUGAAGCUCGCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 20421 0.86 0.172998
Target:  5'- gGCAGGCGCUGCggUCGAuGUGGUGCGCg -3'
miRNA:   3'- -UGUUCGUGAUGa-AGCU-CGCCACGUGg -5'
21386 5' -52.3 NC_004812.1 + 85381 0.76 0.609921
Target:  5'- cCGAGCugUGCUUCGGGCGcccggGgGCCg -3'
miRNA:   3'- uGUUCGugAUGAAGCUCGCca---CgUGG- -5'
21386 5' -52.3 NC_004812.1 + 3577 0.74 0.693723
Target:  5'- gGCAGGCgGCggcgGCggCGGGCGGgcGCGCCg -3'
miRNA:   3'- -UGUUCG-UGa---UGaaGCUCGCCa-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 129085 0.74 0.693723
Target:  5'- gGCAGGCgGCggcgGCggCGGGCGGgcGCGCCg -3'
miRNA:   3'- -UGUUCG-UGa---UGaaGCUCGCCa-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 135913 0.73 0.724511
Target:  5'- uACGAGCGCUACcugcagcugcugUUCGAgGUGGgGCACUg -3'
miRNA:   3'- -UGUUCGUGAUG------------AAGCU-CGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 99434 0.73 0.754542
Target:  5'- aACAuGUACUGCUggaGGCGGUGgACCg -3'
miRNA:   3'- -UGUuCGUGAUGAagcUCGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 108751 0.73 0.754542
Target:  5'- uGCAGGCGCUGCggcugggGGGCGcGgggGCGCCu -3'
miRNA:   3'- -UGUUCGUGAUGaag----CUCGC-Ca--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 48034 0.73 0.764338
Target:  5'- ---cGCGCUGCc-CGAGCGGggcgcGCGCCa -3'
miRNA:   3'- uguuCGUGAUGaaGCUCGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 117111 0.72 0.783549
Target:  5'- -gAGGCGCggcCUcCGGGCGGcGCGCCa -3'
miRNA:   3'- ugUUCGUGau-GAaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 71451 0.72 0.783549
Target:  5'- cGCAGGCACU-CggCGAGCGcGUccaggcGCGCCc -3'
miRNA:   3'- -UGUUCGUGAuGaaGCUCGC-CA------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 148012 0.72 0.783549
Target:  5'- -gAGGCGCggcCUcCGGGCGGcGCGCCa -3'
miRNA:   3'- ugUUCGUGau-GAaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 59251 0.72 0.792943
Target:  5'- gGCGAGC--UGCUUgGcGGCGGUGCGCg -3'
miRNA:   3'- -UGUUCGugAUGAAgC-UCGCCACGUGg -5'
21386 5' -52.3 NC_004812.1 + 143866 0.72 0.792943
Target:  5'- cGCGAGCugUucggggagGCgUUCGAGgGG-GCGCCg -3'
miRNA:   3'- -UGUUCGugA--------UG-AAGCUCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 93103 0.72 0.802185
Target:  5'- aGCGGGCGCUucGCggugUCGGGCGGcgGCGuCUg -3'
miRNA:   3'- -UGUUCGUGA--UGa---AGCUCGCCa-CGU-GG- -5'
21386 5' -52.3 NC_004812.1 + 79149 0.71 0.828899
Target:  5'- gGCuGGCGC-GCUUgGGGUGGUGUcgGCCg -3'
miRNA:   3'- -UGuUCGUGaUGAAgCUCGCCACG--UGG- -5'
21386 5' -52.3 NC_004812.1 + 121165 0.71 0.837437
Target:  5'- uGC-AGCGCUGCgagggcCGGGUGGUGUuucuGCCg -3'
miRNA:   3'- -UGuUCGUGAUGaa----GCUCGCCACG----UGG- -5'
21386 5' -52.3 NC_004812.1 + 78444 0.71 0.837437
Target:  5'- cGCGAGCACUcggucACcucgCGGGCGaugccggccucGUGCGCCg -3'
miRNA:   3'- -UGUUCGUGA-----UGaa--GCUCGC-----------CACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 53126 0.71 0.845779
Target:  5'- cGCGgagcGGUACUACcgCGAGaCGGcGCGCCu -3'
miRNA:   3'- -UGU----UCGUGAUGaaGCUC-GCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 54033 0.71 0.845779
Target:  5'- -gGGGUugUACUUCaggucGGUGGUGUGCCa -3'
miRNA:   3'- ugUUCGugAUGAAGc----UCGCCACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.