miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 153129 0.67 0.972879
Target:  5'- gGCGGGCGCgggggGC-UCGgcGGCGGgGCGCg -3'
miRNA:   3'- -UGUUCGUGa----UGaAGC--UCGCCaCGUGg -5'
21386 5' -52.3 NC_004812.1 + 152938 0.66 0.978065
Target:  5'- nCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3'
miRNA:   3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 152902 0.67 0.969977
Target:  5'- cCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3'
miRNA:   3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 152641 0.67 0.969977
Target:  5'- gGCcGGCGC-GCggCGGGgGG-GCGCCg -3'
miRNA:   3'- -UGuUCGUGaUGaaGCUCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 148169 0.7 0.884277
Target:  5'- cCGAGCGCUcCggCGGGCGGggGCGgCg -3'
miRNA:   3'- uGUUCGUGAuGaaGCUCGCCa-CGUgG- -5'
21386 5' -52.3 NC_004812.1 + 148012 0.72 0.783549
Target:  5'- -gAGGCGCggcCUcCGGGCGGcGCGCCa -3'
miRNA:   3'- ugUUCGUGau-GAaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 145948 0.66 0.978065
Target:  5'- --uGGCGCUGCgcUGGguGCGGgGCACCc -3'
miRNA:   3'- uguUCGUGAUGaaGCU--CGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 145513 0.68 0.947832
Target:  5'- uGCAGGCuCUugUggcUGGGCGGcucgcgGCGCCc -3'
miRNA:   3'- -UGUUCGuGAugAa--GCUCGCCa-----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 145037 0.66 0.982479
Target:  5'- gGCGAGCGCggagGCgg-GGGCGGcgGCggACCu -3'
miRNA:   3'- -UGUUCGUGa---UGaagCUCGCCa-CG--UGG- -5'
21386 5' -52.3 NC_004812.1 + 143866 0.72 0.792943
Target:  5'- cGCGAGCugUucggggagGCgUUCGAGgGG-GCGCCg -3'
miRNA:   3'- -UGUUCGugA--------UG-AAGCUCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 141275 0.66 0.97505
Target:  5'- cCAGGCGCUGCgucacuucccccUCGcGCGGccUGCGCa -3'
miRNA:   3'- uGUUCGUGAUGa-----------AGCuCGCC--ACGUGg -5'
21386 5' -52.3 NC_004812.1 + 140610 0.67 0.969977
Target:  5'- -gGAGCuGCUGCUggcgCGGggccGCGGggucgGCGCCg -3'
miRNA:   3'- ugUUCG-UGAUGAa---GCU----CGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 140427 0.67 0.96352
Target:  5'- ---cGCGCUGCUggcgaUCGAGCgcccccagucgGGcGCGCCg -3'
miRNA:   3'- uguuCGUGAUGA-----AGCUCG-----------CCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 138479 0.68 0.947832
Target:  5'- -gGGGCcCUGCUggacgCgGAGCGGUacgaGCGCCg -3'
miRNA:   3'- ugUUCGuGAUGAa----G-CUCGCCA----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 138461 0.68 0.947832
Target:  5'- uACGGGgGCUG--UCgGGGCGGgGCGCCg -3'
miRNA:   3'- -UGUUCgUGAUgaAG-CUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 136249 0.66 0.984418
Target:  5'- cACAAGCGCgACUUU--GCGGagGCGCg -3'
miRNA:   3'- -UGUUCGUGaUGAAGcuCGCCa-CGUGg -5'
21386 5' -52.3 NC_004812.1 + 135968 0.68 0.93853
Target:  5'- -gGAGC-CUGCUcUCGgaggaGGCGGUGCGgCg -3'
miRNA:   3'- ugUUCGuGAUGA-AGC-----UCGCCACGUgG- -5'
21386 5' -52.3 NC_004812.1 + 135913 0.73 0.724511
Target:  5'- uACGAGCGCUACcugcagcugcugUUCGAgGUGGgGCACUg -3'
miRNA:   3'- -UGUUCGUGAUG------------AAGCU-CGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 135610 0.66 0.980365
Target:  5'- -gGGGCGCacgcGCUUCGuGCaccuGGUGCugCu -3'
miRNA:   3'- ugUUCGUGa---UGAAGCuCG----CCACGugG- -5'
21386 5' -52.3 NC_004812.1 + 135272 1.11 0.004746
Target:  5'- uACAAGCACUACUUCGAGCGGUGCACCc -3'
miRNA:   3'- -UGUUCGUGAUGAAGCUCGCCACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.