Results 41 - 60 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21386 | 5' | -52.3 | NC_004812.1 | + | 122228 | 0.67 | 0.972879 |
Target: 5'- gGCGGGCGCgggggGC-UCGgcGGCGGgGCGCg -3' miRNA: 3'- -UGUUCGUGa----UGaAGC--UCGCCaCGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 71922 | 0.67 | 0.972879 |
Target: 5'- cGCGGGCGCUGCagCG-GCGaGgacgGCGCg -3' miRNA: 3'- -UGUUCGUGAUGaaGCuCGC-Ca---CGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 111555 | 0.67 | 0.972879 |
Target: 5'- uGCAccagcGGCGCUGCaugUUCGGcGUGGUGaGCCc -3' miRNA: 3'- -UGU-----UCGUGAUG---AAGCU-CGCCACgUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 103211 | 0.67 | 0.972879 |
Target: 5'- ---cGCGCUGCggaCGAGCGGcagguucagGCGCUc -3' miRNA: 3'- uguuCGUGAUGaa-GCUCGCCa--------CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 74922 | 0.67 | 0.971163 |
Target: 5'- uGCAGGCGCg----CGAGCgGGUcgggggagccgucgcGCGCCg -3' miRNA: 3'- -UGUUCGUGaugaaGCUCG-CCA---------------CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 83498 | 0.67 | 0.96686 |
Target: 5'- -gGAGCGCgACggcCaGGCGGUGCGCg -3' miRNA: 3'- ugUUCGUGaUGaa-GcUCGCCACGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 85135 | 0.67 | 0.96686 |
Target: 5'- -gGGGCGCg----CGGGCGGgggcGCGCCu -3' miRNA: 3'- ugUUCGUGaugaaGCUCGCCa---CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 153129 | 0.67 | 0.972879 |
Target: 5'- gGCGGGCGCgggggGC-UCGgcGGCGGgGCGCg -3' miRNA: 3'- -UGUUCGUGa----UGaAGC--UCGCCaCGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 103741 | 0.67 | 0.959584 |
Target: 5'- cACcGGCGCUACUUCaccuucgGGGCGGgcuacgUGUACUu -3' miRNA: 3'- -UGuUCGUGAUGAAG-------CUCGCC------ACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 32232 | 0.67 | 0.959953 |
Target: 5'- cGCGGGCGgU-CcgCGGGCGGUcCGCCg -3' miRNA: 3'- -UGUUCGUgAuGaaGCUCGCCAcGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 123836 | 0.67 | 0.972879 |
Target: 5'- cCGGGCGCacGCgaCGGGCGaGUGCgACCc -3' miRNA: 3'- uGUUCGUGa-UGaaGCUCGC-CACG-UGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 152902 | 0.67 | 0.969977 |
Target: 5'- cCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3' miRNA: 3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 131402 | 0.67 | 0.969977 |
Target: 5'- aGCGAGCAC-GCguccUGGGCGGacgUGCGCg -3' miRNA: 3'- -UGUUCGUGaUGaa--GCUCGCC---ACGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 140610 | 0.67 | 0.969977 |
Target: 5'- -gGAGCuGCUGCUggcgCGGggccGCGGggucgGCGCCg -3' miRNA: 3'- ugUUCG-UGAUGAa---GCU----CGCCa----CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 48303 | 0.67 | 0.972879 |
Target: 5'- cGCAcGCGCgUGCgggcUCGGGCguGGUGC-CCg -3' miRNA: 3'- -UGUuCGUG-AUGa---AGCUCG--CCACGuGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 1331 | 0.67 | 0.959953 |
Target: 5'- cGCGGGCGgU-CcgCGGGCGGUcCGCCg -3' miRNA: 3'- -UGUUCGUgAuGaaGCUCGCCAcGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 67786 | 0.67 | 0.959953 |
Target: 5'- -gGGGCGCgggcgGCUUCGGGgGGggcggGC-CCg -3' miRNA: 3'- ugUUCGUGa----UGAAGCUCgCCa----CGuGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 78173 | 0.67 | 0.96352 |
Target: 5'- gACGGGCuggAUgagCGGGaGGUGCGCCg -3' miRNA: 3'- -UGUUCGugaUGaa-GCUCgCCACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 129411 | 0.67 | 0.96352 |
Target: 5'- cGCGGGCGCgGCggCGcGGCGGcgGgGCCg -3' miRNA: 3'- -UGUUCGUGaUGaaGC-UCGCCa-CgUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 109885 | 0.67 | 0.965881 |
Target: 5'- gACGuGGCuCUGCgggagccgauuccgUUCGAGCGGcUGCACg -3' miRNA: 3'- -UGU-UCGuGAUG--------------AAGCUCGCC-ACGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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