miRNA display CGI


Results 41 - 60 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 63826 0.68 0.952114
Target:  5'- gGCGAGUACUGCgugcaggacUCGcuGCuGGUGgGCCa -3'
miRNA:   3'- -UGUUCGUGAUGa--------AGCu-CG-CCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 66550 0.7 0.869546
Target:  5'- cGCAGGCGCUgggcuccagucgGCggagggaCGAGCGGcUGCGCg -3'
miRNA:   3'- -UGUUCGUGA------------UGaa-----GCUCGCC-ACGUGg -5'
21386 5' -52.3 NC_004812.1 + 67786 0.67 0.959953
Target:  5'- -gGGGCGCgggcgGCUUCGGGgGGggcggGC-CCg -3'
miRNA:   3'- ugUUCGUGa----UGAAGCUCgCCa----CGuGG- -5'
21386 5' -52.3 NC_004812.1 + 68170 0.7 0.877027
Target:  5'- gGCAGGguCggcgGCcgCGGGCGGgggcGCGCCg -3'
miRNA:   3'- -UGUUCguGa---UGaaGCUCGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 71202 0.68 0.947832
Target:  5'- cGCGGGcCGCgccagGCggCGAGCGG-GCgGCCg -3'
miRNA:   3'- -UGUUC-GUGa----UGaaGCUCGCCaCG-UGG- -5'
21386 5' -52.3 NC_004812.1 + 71237 0.66 0.975572
Target:  5'- -aGGGCGCggcggggACggCG-GCGGUGgGCCg -3'
miRNA:   3'- ugUUCGUGa------UGaaGCuCGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 71451 0.72 0.783549
Target:  5'- cGCAGGCACU-CggCGAGCGcGUccaggcGCGCCc -3'
miRNA:   3'- -UGUUCGUGAuGaaGCUCGC-CA------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 71922 0.67 0.972879
Target:  5'- cGCGGGCGCUGCagCG-GCGaGgacgGCGCg -3'
miRNA:   3'- -UGUUCGUGAUGaaGCuCGC-Ca---CGUGg -5'
21386 5' -52.3 NC_004812.1 + 72823 0.69 0.928226
Target:  5'- cCAGGCACgggggGCUccccgCGAGCGGc-CGCCg -3'
miRNA:   3'- uGUUCGUGa----UGAa----GCUCGCCacGUGG- -5'
21386 5' -52.3 NC_004812.1 + 73221 0.66 0.975572
Target:  5'- cGCGGccGCcCUGCgggUCGGGCGGgcgGC-CCg -3'
miRNA:   3'- -UGUU--CGuGAUGa--AGCUCGCCa--CGuGG- -5'
21386 5' -52.3 NC_004812.1 + 73774 0.69 0.922695
Target:  5'- cCGGGUGCccgcggGCUccgCGAGCGGggcggGCGCCg -3'
miRNA:   3'- uGUUCGUGa-----UGAa--GCUCGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 74862 0.7 0.869546
Target:  5'- aGCGAGCGCcGCa--GGGCGGccguccgGCGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaagCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 74922 0.67 0.971163
Target:  5'- uGCAGGCGCg----CGAGCgGGUcgggggagccgucgcGCGCCg -3'
miRNA:   3'- -UGUUCGUGaugaaGCUCG-CCA---------------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 75808 0.69 0.922695
Target:  5'- gGCGGGCG--GCcgCGAGCGGcggcaGCGCCg -3'
miRNA:   3'- -UGUUCGUgaUGaaGCUCGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 75950 0.66 0.982479
Target:  5'- cGCGGGUugUACUUguucUGcGCGGccaGCGCCu -3'
miRNA:   3'- -UGUUCGugAUGAA----GCuCGCCa--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 77249 0.68 0.952114
Target:  5'- -gGGGCGCUGCccUCGcGgGG-GCGCCg -3'
miRNA:   3'- ugUUCGUGAUGa-AGCuCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 78173 0.67 0.96352
Target:  5'- gACGGGCuggAUgagCGGGaGGUGCGCCg -3'
miRNA:   3'- -UGUUCGugaUGaa-GCUCgCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 78444 0.71 0.837437
Target:  5'- cGCGAGCACUcggucACcucgCGGGCGaugccggccucGUGCGCCg -3'
miRNA:   3'- -UGUUCGUGA-----UGaa--GCUCGC-----------CACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 78923 0.68 0.941899
Target:  5'- gACGAcGCugUugUuggaccggcuggggUCGGG-GGUGCGCCg -3'
miRNA:   3'- -UGUU-CGugAugA--------------AGCUCgCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 79149 0.71 0.828899
Target:  5'- gGCuGGCGC-GCUUgGGGUGGUGUcgGCCg -3'
miRNA:   3'- -UGuUCGUGaUGAAgCUCGCCACG--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.