miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 54661 0.67 0.851686
Target:  5'- gCCGCCgCGgggcccagCGgCCGGGUCgcggcgaggagggcGAGGGCCa -3'
miRNA:   3'- -GGCGGaGUa-------GCaGGUCCAG--------------CUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 151346 0.67 0.871038
Target:  5'- cCCGCCUCcgUGcCCcugccgcgcguguguGGGUCuugugcuucucccGGGAGCCc -3'
miRNA:   3'- -GGCGGAGuaGCaGG---------------UCCAG-------------CUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 145546 0.67 0.868874
Target:  5'- cCCGgUUCGcgcUgGUCCcgGGGUCGGGcGCCa -3'
miRNA:   3'- -GGCgGAGU---AgCAGG--UCCAGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 47446 0.67 0.868874
Target:  5'- aCCGCCUCc-CGccCCAGGccCGAcGGCCg -3'
miRNA:   3'- -GGCGGAGuaGCa-GGUCCa-GCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 123004 0.67 0.861529
Target:  5'- gCCGCCgu-UCGUgguGGUCGAGGGgCg -3'
miRNA:   3'- -GGCGGaguAGCAgguCCAGCUCUCgG- -5'
21387 3' -56.7 NC_004812.1 + 124617 0.67 0.862273
Target:  5'- cCCGCCUCcgUGgcggaccugccgcggCCGGGgggCGAGAuCCu -3'
miRNA:   3'- -GGCGGAGuaGCa--------------GGUCCa--GCUCUcGG- -5'
21387 3' -56.7 NC_004812.1 + 11141 0.67 0.868148
Target:  5'- gCCGUagagCUCGUCGUCggccaggcgaaugUAGGUCG-GuGCCa -3'
miRNA:   3'- -GGCG----GAGUAGCAG-------------GUCCAGCuCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 44117 0.67 0.861529
Target:  5'- cCCGCCUgA-CGgCCGGGgCGucGAGCCc -3'
miRNA:   3'- -GGCGGAgUaGCaGGUCCaGCu-CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 11434 0.67 0.882949
Target:  5'- aCCGCCgg--CGggaGGGUgcCGGGAGCCg -3'
miRNA:   3'- -GGCGGaguaGCaggUCCA--GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 31336 0.67 0.882949
Target:  5'- gCCGCCgCGUacgcCGUCCGGaagaaGUCGucGGCCg -3'
miRNA:   3'- -GGCGGaGUA----GCAGGUC-----CAGCucUCGG- -5'
21387 3' -56.7 NC_004812.1 + 130185 0.67 0.882949
Target:  5'- gCGCCUCGUCcaccUCCGGcG-CGccccAGAGCCc -3'
miRNA:   3'- gGCGGAGUAGc---AGGUC-CaGC----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 71279 0.67 0.882949
Target:  5'- gCCGCCgaaaGUCGccgCCAGG-CGccaccGAGCCc -3'
miRNA:   3'- -GGCGGag--UAGCa--GGUCCaGCu----CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 95411 0.67 0.882265
Target:  5'- cCCGCC-CAUCGUucccccgccauggCCGGGUgGcGcGCCg -3'
miRNA:   3'- -GGCGGaGUAGCA-------------GGUCCAgCuCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 101181 0.67 0.861529
Target:  5'- gCgGCCUCGg-GUCC-GGUCugcGGGGCCa -3'
miRNA:   3'- -GgCGGAGUagCAGGuCCAGc--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 7727 0.67 0.876016
Target:  5'- -gGUCUCcgCG-CCGGG-CGAG-GCCg -3'
miRNA:   3'- ggCGGAGuaGCaGGUCCaGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 150617 0.67 0.876016
Target:  5'- gCGCCgacgCG-CGuUCCGGGgCGuGGGCCg -3'
miRNA:   3'- gGCGGa---GUaGC-AGGUCCaGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 39111 0.67 0.861529
Target:  5'- gCCGCgUCG-CGguggUCAGGUCcacGAGCCa -3'
miRNA:   3'- -GGCGgAGUaGCa---GGUCCAGcu-CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 30370 0.67 0.861529
Target:  5'- gCCG-CUCggCGgCCGGGUCG-GGGCUc -3'
miRNA:   3'- -GGCgGAGuaGCaGGUCCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 76516 0.67 0.861529
Target:  5'- -gGCCgUCGaCGgcugCCuGGUCGAGGGCg -3'
miRNA:   3'- ggCGG-AGUaGCa---GGuCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 46207 0.67 0.861529
Target:  5'- cUCGCC-CGUccCGUCCAGcagcUCGGGGGCg -3'
miRNA:   3'- -GGCGGaGUA--GCAGGUCc---AGCUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.