miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 102914 0.66 0.902459
Target:  5'- gCGCCUCGggggggCGgCCGcGaaCGAGAGCCg -3'
miRNA:   3'- gGCGGAGUa-----GCaGGU-CcaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 70270 0.66 0.902459
Target:  5'- aUCGCgguggggggcaaCUCGUUGUCCGGGgcguugUCGAGAucgcggaacucgGCCa -3'
miRNA:   3'- -GGCG------------GAGUAGCAGGUCC------AGCUCU------------CGG- -5'
21387 3' -56.7 NC_004812.1 + 8233 0.66 0.914357
Target:  5'- gCGCC-CggCGgCCGGGcCGGGGGUCc -3'
miRNA:   3'- gGCGGaGuaGCaGGUCCaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 126608 0.66 0.896174
Target:  5'- -gGCC-CAgcgCGUCCuGGccaUCGAGGGCg -3'
miRNA:   3'- ggCGGaGUa--GCAGGuCC---AGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 60583 0.66 0.914357
Target:  5'- gCGCaC-CcgCGUCCAGGUCccguagcggaGGGGGCg -3'
miRNA:   3'- gGCG-GaGuaGCAGGUCCAG----------CUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 147981 0.66 0.919967
Target:  5'- uCCGUgCUCAUgGcgCCGGG-CGgcGGGGCCg -3'
miRNA:   3'- -GGCG-GAGUAgCa-GGUCCaGC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 11302 0.66 0.902459
Target:  5'- gCGCCgcgCGgggCGcCgCGGGgCGGGGGCCg -3'
miRNA:   3'- gGCGGa--GUa--GCaG-GUCCaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 145801 0.66 0.902459
Target:  5'- gCGCCUCGggcUCGgugugggcggCgGGGUCGGcGGCCc -3'
miRNA:   3'- gGCGGAGU---AGCa---------GgUCCAGCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 10353 0.66 0.914357
Target:  5'- gCCGUCUCGUCGUCgcucuccgugUAGuacgccUCGGGGGUCu -3'
miRNA:   3'- -GGCGGAGUAGCAG----------GUCc-----AGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 25597 0.66 0.919967
Target:  5'- cCCGCCUCGUCcUUCucGUCGucGGCg -3'
miRNA:   3'- -GGCGGAGUAGcAGGucCAGCucUCGg -5'
21387 3' -56.7 NC_004812.1 + 128480 0.66 0.919967
Target:  5'- aCCGUCUCGcCGaUCAGGaggagcagcUCGAGgaAGCCg -3'
miRNA:   3'- -GGCGGAGUaGCaGGUCC---------AGCUC--UCGG- -5'
21387 3' -56.7 NC_004812.1 + 82044 0.66 0.902459
Target:  5'- cCCGCCUCcgCGaggaCguGGUggcgCGGGuGCCg -3'
miRNA:   3'- -GGCGGAGuaGCa---GguCCA----GCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 141557 0.66 0.914357
Target:  5'- gCCGCCagUCcgCcUCCAGGUCccgguGAGCg -3'
miRNA:   3'- -GGCGG--AGuaGcAGGUCCAGcu---CUCGg -5'
21387 3' -56.7 NC_004812.1 + 46410 0.66 0.910882
Target:  5'- gCGUCUCGUgcagcgCGUCCAGGuacgccgccuccucgUCGAcacccccgcGGGCCa -3'
miRNA:   3'- gGCGGAGUA------GCAGGUCC---------------AGCU---------CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 8841 0.66 0.896174
Target:  5'- -aGCCUCGgcgaccccgCGUCCcg--CGGGAGCCc -3'
miRNA:   3'- ggCGGAGUa--------GCAGGuccaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 105852 0.66 0.896174
Target:  5'- uCgGCCUCGgggaCGUCggacggCGGGUCGuGGGCg -3'
miRNA:   3'- -GgCGGAGUa---GCAG------GUCCAGCuCUCGg -5'
21387 3' -56.7 NC_004812.1 + 51163 0.66 0.896174
Target:  5'- cCCGCCccgCGUCGUUCccgacucgggcGGGcgCGGGcGCCg -3'
miRNA:   3'- -GGCGGa--GUAGCAGG-----------UCCa-GCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 27866 0.66 0.902459
Target:  5'- cCCGCagUCGcucUCGgaagCUGGGUCGGuGGGCCc -3'
miRNA:   3'- -GGCGg-AGU---AGCa---GGUCCAGCU-CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 115258 0.66 0.908521
Target:  5'- -gGCCUCG--GUUCGGGacUCGAG-GCCg -3'
miRNA:   3'- ggCGGAGUagCAGGUCC--AGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 14070 0.66 0.910882
Target:  5'- cCCGCCUCGUCGaUCacgacgauguugcugCGGGUgaacgcgGGGAGCg -3'
miRNA:   3'- -GGCGGAGUAGC-AG---------------GUCCAg------CUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.