miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 11580 0.68 0.821961
Target:  5'- cCCGCCUCcgCGcucgCCGGGgacaCGGcGGGCg -3'
miRNA:   3'- -GGCGGAGuaGCa---GGUCCa---GCU-CUCGg -5'
21387 3' -56.7 NC_004812.1 + 12155 0.73 0.576963
Target:  5'- cCCGCUcaauacacaaugagCA-CGUCCGGGUCacgGAGGGCCg -3'
miRNA:   3'- -GGCGGa-------------GUaGCAGGUCCAG---CUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 13021 0.72 0.592842
Target:  5'- gCgGCCUgAUCG-CCggGGGUCGcGGGGCCg -3'
miRNA:   3'- -GgCGGAgUAGCaGG--UCCAGC-UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 13041 0.71 0.65278
Target:  5'- uCCGUuucagCUCGUCGcCCAGGcgCGccAGGGCCg -3'
miRNA:   3'- -GGCG-----GAGUAGCaGGUCCa-GC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 13115 0.8 0.249315
Target:  5'- cCCGCCUCGccgCGUCCAGGcCG-GGGCg -3'
miRNA:   3'- -GGCGGAGUa--GCAGGUCCaGCuCUCGg -5'
21387 3' -56.7 NC_004812.1 + 13316 0.66 0.908521
Target:  5'- uCCGCCg---CG-CCggGGGUCGGGGGUg -3'
miRNA:   3'- -GGCGGaguaGCaGG--UCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 14070 0.66 0.910882
Target:  5'- cCCGCCUCGUCGaUCacgacgauguugcugCGGGUgaacgcgGGGAGCg -3'
miRNA:   3'- -GGCGGAGUAGC-AG---------------GUCCAg------CUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 14087 0.67 0.876015
Target:  5'- gCCGCCcCAUCGggaaCCGGGggCGAuccgGGGCg -3'
miRNA:   3'- -GGCGGaGUAGCa---GGUCCa-GCU----CUCGg -5'
21387 3' -56.7 NC_004812.1 + 14310 0.78 0.325775
Target:  5'- cCCGCCgCGccggcccggggcccUCGUCCAGGagcucCGGGAGCCg -3'
miRNA:   3'- -GGCGGaGU--------------AGCAGGUCCa----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 14581 0.68 0.838332
Target:  5'- cUCGuCCUCGUCcUCCGGGgccagCucGGGCCg -3'
miRNA:   3'- -GGC-GGAGUAGcAGGUCCa----GcuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 16737 0.7 0.741047
Target:  5'- cUCGCC-CGUCGaCgCAGGgcgcccCGGGGGCCg -3'
miRNA:   3'- -GGCGGaGUAGCaG-GUCCa-----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 17902 0.75 0.449859
Target:  5'- cCCGCCgcgCccgcgGUCGUCCGGGcgCGAG-GCCc -3'
miRNA:   3'- -GGCGGa--G-----UAGCAGGUCCa-GCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 18385 0.71 0.672714
Target:  5'- -gGCCccaCAUCGUCCAGG-CGGGGGaCg -3'
miRNA:   3'- ggCGGa--GUAGCAGGUCCaGCUCUCgG- -5'
21387 3' -56.7 NC_004812.1 + 18853 0.68 0.838332
Target:  5'- gCGCCUCGgcccagcggGUCCcggGGGUCGGcGGCCc -3'
miRNA:   3'- gGCGGAGUag-------CAGG---UCCAGCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 19156 0.68 0.821961
Target:  5'- gCGCCgaaGUCGcCCAGGcagauguccUCG-GGGCCg -3'
miRNA:   3'- gGCGGag-UAGCaGGUCC---------AGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 19627 0.67 0.885663
Target:  5'- gCCGCCUCccgGUCCAGGcgcucuagcuccUguguggugagaccgcCGGGGGCCg -3'
miRNA:   3'- -GGCGGAGuagCAGGUCC------------A---------------GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 19732 0.73 0.582908
Target:  5'- cCCcCCUCcUCGUCCGGGaacgcgacgucgUCGGGGGCg -3'
miRNA:   3'- -GGcGGAGuAGCAGGUCC------------AGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 20270 0.69 0.759882
Target:  5'- gCCGCCUCuagGaCgAGGUCGGGGGUg -3'
miRNA:   3'- -GGCGGAGuagCaGgUCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 22642 0.67 0.882949
Target:  5'- cCCGCCacccgggggcUCccgCGUgcCCGGGgccggCGGGAGCCc -3'
miRNA:   3'- -GGCGG----------AGua-GCA--GGUCCa----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 22762 0.66 0.908521
Target:  5'- -gGaCCUgGUgCGUCCAGGU-GGGGGCg -3'
miRNA:   3'- ggC-GGAgUA-GCAGGUCCAgCUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.