miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 12155 0.73 0.576963
Target:  5'- cCCGCUcaauacacaaugagCA-CGUCCGGGUCacgGAGGGCCg -3'
miRNA:   3'- -GGCGGa-------------GUaGCAGGUCCAG---CUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 19732 0.73 0.582908
Target:  5'- cCCcCCUCcUCGUCCGGGaacgcgacgucgUCGGGGGCg -3'
miRNA:   3'- -GGcGGAGuAGCAGGUCC------------AGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 52001 0.72 0.592842
Target:  5'- uCCGCaUCAUCGUCUg---CGAGGGCCu -3'
miRNA:   3'- -GGCGgAGUAGCAGGuccaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 68252 0.72 0.592842
Target:  5'- uCgGCCUCGacguccUCGUCCAGGgcccCGGaGGCCg -3'
miRNA:   3'- -GgCGGAGU------AGCAGGUCCa---GCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 13021 0.72 0.592842
Target:  5'- gCgGCCUgAUCG-CCggGGGUCGcGGGGCCg -3'
miRNA:   3'- -GgCGGAgUAGCaGG--UCCAGC-UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 57775 0.72 0.602803
Target:  5'- cCCGCCguccgCGccgccCGUCUGGGUgaCGAGGGCCu -3'
miRNA:   3'- -GGCGGa----GUa----GCAGGUCCA--GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 57785 0.72 0.602803
Target:  5'- gCGCCgcc-CGUCUGGGUgaCGAGGGCCu -3'
miRNA:   3'- gGCGGaguaGCAGGUCCA--GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 106741 0.72 0.612785
Target:  5'- -gGCC-CAUCGUCCGGGcgCGGGGGg- -3'
miRNA:   3'- ggCGGaGUAGCAGGUCCa-GCUCUCgg -5'
21387 3' -56.7 NC_004812.1 + 50680 0.72 0.622781
Target:  5'- uCUGCCUCugugcGUCG-CCGGGgacUCGGcGAGCCg -3'
miRNA:   3'- -GGCGGAG-----UAGCaGGUCC---AGCU-CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 8741 0.72 0.622781
Target:  5'- aCGCCUCGaCGgccccgaccccCCAGGcagccgCGAGAGCCu -3'
miRNA:   3'- gGCGGAGUaGCa----------GGUCCa-----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 139138 0.71 0.642786
Target:  5'- aCCGCggCAUcCG-CCGcGGUCGAGAGCg -3'
miRNA:   3'- -GGCGgaGUA-GCaGGU-CCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 45006 0.71 0.651781
Target:  5'- gUGCCggaggCGUUGUUCAGGUgggccgcCGAGAGCUc -3'
miRNA:   3'- gGCGGa----GUAGCAGGUCCA-------GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 25898 0.71 0.65278
Target:  5'- uCgGCCUCGgaGUCgGGGUCG-GAGUCg -3'
miRNA:   3'- -GgCGGAGUagCAGgUCCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 84462 0.71 0.65278
Target:  5'- cCCGCCUCuggguUCGUUCGGcUCGcuAGAGUCu -3'
miRNA:   3'- -GGCGGAGu----AGCAGGUCcAGC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 60765 0.71 0.65278
Target:  5'- gCGCCUCG--GUCC-GGUUGGGGGCg -3'
miRNA:   3'- gGCGGAGUagCAGGuCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 13041 0.71 0.65278
Target:  5'- uCCGUuucagCUCGUCGcCCAGGcgCGccAGGGCCg -3'
miRNA:   3'- -GGCG-----GAGUAGCaGGUCCa-GC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 151406 0.71 0.65278
Target:  5'- uCgGCCUCGgaGUCgGGGUCG-GAGUCg -3'
miRNA:   3'- -GgCGGAGUagCAGgUCCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 18385 0.71 0.672714
Target:  5'- -gGCCccaCAUCGUCCAGG-CGGGGGaCg -3'
miRNA:   3'- ggCGGa--GUAGCAGGUCCaGCUCUCgG- -5'
21387 3' -56.7 NC_004812.1 + 81774 0.71 0.672714
Target:  5'- uCCGCCaucugCAUCGUCgGGa--GGGGGCCg -3'
miRNA:   3'- -GGCGGa----GUAGCAGgUCcagCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 79291 0.71 0.672714
Target:  5'- cCCGuCCUCGUCGUCUucGGcGUCGuc-GCCg -3'
miRNA:   3'- -GGC-GGAGUAGCAGG--UC-CAGCucuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.