miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 134329 1.14 0.001548
Target:  5'- aCCGCCUCAUCGUCCAGGUCGAGAGCCu -3'
miRNA:   3'- -GGCGGAGUAGCAGGUCCAGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 23462 0.8 0.24123
Target:  5'- gCCGCgCUCGUCGUCCuccugcuggcgguGGUCGAGGGgCu -3'
miRNA:   3'- -GGCG-GAGUAGCAGGu------------CCAGCUCUCgG- -5'
21387 3' -56.7 NC_004812.1 + 13115 0.8 0.249315
Target:  5'- cCCGCCUCGccgCGUCCAGGcCG-GGGCg -3'
miRNA:   3'- -GGCGGAGUa--GCAGGUCCaGCuCUCGg -5'
21387 3' -56.7 NC_004812.1 + 14310 0.78 0.325775
Target:  5'- cCCGCCgCGccggcccggggcccUCGUCCAGGagcucCGGGAGCCg -3'
miRNA:   3'- -GGCGGaGU--------------AGCAGGUCCa----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 91564 0.77 0.357949
Target:  5'- aCCGCgUCGUCGUaaaacagCAGGUCGAccaGGGCCc -3'
miRNA:   3'- -GGCGgAGUAGCAg------GUCCAGCU---CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 32058 0.76 0.398073
Target:  5'- aCCGCCUCggcGUCGUCgCGGGgccCGuGGGGCCc -3'
miRNA:   3'- -GGCGGAG---UAGCAG-GUCCa--GC-UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 61305 0.76 0.423492
Target:  5'- gCgGCCUCcgcgGUCGUUCAacgcGGUgGAGAGCCa -3'
miRNA:   3'- -GgCGGAG----UAGCAGGU----CCAgCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 28242 0.75 0.432179
Target:  5'- gCCGCCUCGUCGUCguGGaCGccGuGCCc -3'
miRNA:   3'- -GGCGGAGUAGCAGguCCaGCu-CuCGG- -5'
21387 3' -56.7 NC_004812.1 + 153750 0.75 0.432179
Target:  5'- gCCGCCUCGUCGUCguGGaCGccGuGCCc -3'
miRNA:   3'- -GGCGGAGUAGCAGguCCaGCu-CuCGG- -5'
21387 3' -56.7 NC_004812.1 + 42004 0.75 0.449859
Target:  5'- gCGCCcCAUCG-CCGGGUCGAuGGCg -3'
miRNA:   3'- gGCGGaGUAGCaGGUCCAGCUcUCGg -5'
21387 3' -56.7 NC_004812.1 + 46468 0.75 0.449859
Target:  5'- -gGCCUCcgCGUCCGGGUCGuc-GUCg -3'
miRNA:   3'- ggCGGAGuaGCAGGUCCAGCucuCGG- -5'
21387 3' -56.7 NC_004812.1 + 17902 0.75 0.449859
Target:  5'- cCCGCCgcgCccgcgGUCGUCCGGGcgCGAG-GCCc -3'
miRNA:   3'- -GGCGGa--G-----UAGCAGGUCCa-GCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 92891 0.74 0.524223
Target:  5'- aCCGCCUCGgcgacggCGUUCAGcuuguagcUCGAGAGCUu -3'
miRNA:   3'- -GGCGGAGUa------GCAGGUCc-------AGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 10594 0.74 0.524223
Target:  5'- cCCGCCUCuUCcUCCccGUCGuuAGAGCCg -3'
miRNA:   3'- -GGCGGAGuAGcAGGucCAGC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 136433 0.74 0.524223
Target:  5'- gCGCC-CGcUCGcCCGGGUCGGG-GCCc -3'
miRNA:   3'- gGCGGaGU-AGCaGGUCCAGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 108896 0.73 0.553333
Target:  5'- gCCGCCUCGcgccggccgggCGcCCGGGUCGGGuaaucGCCc -3'
miRNA:   3'- -GGCGGAGUa----------GCaGGUCCAGCUCu----CGG- -5'
21387 3' -56.7 NC_004812.1 + 87267 0.73 0.553333
Target:  5'- cUCGCCaUCAUCGggcggGGGUCGAG-GCCg -3'
miRNA:   3'- -GGCGG-AGUAGCagg--UCCAGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 60363 0.73 0.563148
Target:  5'- gCGCCUCGgaCGUCaGGGUCGAcguGGCCg -3'
miRNA:   3'- gGCGGAGUa-GCAGgUCCAGCUc--UCGG- -5'
21387 3' -56.7 NC_004812.1 + 155136 0.73 0.573008
Target:  5'- uCCGCggCggCGgggggCCGGGUCGAGGGCg -3'
miRNA:   3'- -GGCGgaGuaGCa----GGUCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 124235 0.73 0.573008
Target:  5'- uCCGCggCggCGgggggCCGGGUCGAGGGCg -3'
miRNA:   3'- -GGCGgaGuaGCa----GGUCCAGCUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.