miRNA display CGI


Results 1 - 20 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 135444 0.66 0.919967
Target:  5'- gCGCCUCggCGUCCcgcGGcacgcCGAGAcccccGCCg -3'
miRNA:   3'- gGCGGAGuaGCAGGu--CCa----GCUCU-----CGG- -5'
21387 3' -56.7 NC_004812.1 + 50756 0.66 0.919967
Target:  5'- cCCGCCgucCGaCGUCCccgAGGcCGAGAugaaccccgcGCCg -3'
miRNA:   3'- -GGCGGa--GUaGCAGG---UCCaGCUCU----------CGG- -5'
21387 3' -56.7 NC_004812.1 + 138508 0.66 0.919967
Target:  5'- gCGCCgCGUCGUCCGcGuGUgCGGcGGCCc -3'
miRNA:   3'- gGCGGaGUAGCAGGU-C-CA-GCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 115258 0.66 0.908521
Target:  5'- -gGCCUCG--GUUCGGGacUCGAG-GCCg -3'
miRNA:   3'- ggCGGAGUagCAGGUCC--AGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 51163 0.66 0.896174
Target:  5'- cCCGCCccgCGUCGUUCccgacucgggcGGGcgCGGGcGCCg -3'
miRNA:   3'- -GGCGGa--GUAGCAGG-----------UCCa-GCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 102914 0.66 0.902459
Target:  5'- gCGCCUCGggggggCGgCCGcGaaCGAGAGCCg -3'
miRNA:   3'- gGCGGAGUa-----GCaGGU-CcaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 86454 0.66 0.914357
Target:  5'- gCCGCUUCGugcaguguggcUCGcacugcgCCAuGGUCGuugacGGAGCCg -3'
miRNA:   3'- -GGCGGAGU-----------AGCa------GGU-CCAGC-----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 107671 0.66 0.908521
Target:  5'- cUCGCCgCGUCGgcgCCAagcuGGUgGcGGGCCa -3'
miRNA:   3'- -GGCGGaGUAGCa--GGU----CCAgCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 22762 0.66 0.908521
Target:  5'- -gGaCCUgGUgCGUCCAGGU-GGGGGCg -3'
miRNA:   3'- ggC-GGAgUA-GCAGGUCCAgCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 89167 0.66 0.907326
Target:  5'- gCGCCUCcUCGUCCAcgcauauaagCG-GGGCCu -3'
miRNA:   3'- gGCGGAGuAGCAGGUcca-------GCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 25597 0.66 0.919967
Target:  5'- cCCGCCUCGUCcUUCucGUCGucGGCg -3'
miRNA:   3'- -GGCGGAGUAGcAGGucCAGCucUCGg -5'
21387 3' -56.7 NC_004812.1 + 45063 0.66 0.908521
Target:  5'- uCCGCgUCGgccgggccggCGUCCGGGg-GAaAGCCg -3'
miRNA:   3'- -GGCGgAGUa---------GCAGGUCCagCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 79806 0.66 0.896174
Target:  5'- aCGCCUCGUCG-CC--GUCGcgguAGAGUCc -3'
miRNA:   3'- gGCGGAGUAGCaGGucCAGC----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 14070 0.66 0.910882
Target:  5'- cCCGCCUCGUCGaUCacgacgauguugcugCGGGUgaacgcgGGGAGCg -3'
miRNA:   3'- -GGCGGAGUAGC-AG---------------GUCCAg------CUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 66083 0.66 0.902459
Target:  5'- gCCGCCguaggUGggGUCCGGGUagaagagcaggCGGGGGUCg -3'
miRNA:   3'- -GGCGGa----GUagCAGGUCCA-----------GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 27866 0.66 0.902459
Target:  5'- cCCGCagUCGcucUCGgaagCUGGGUCGGuGGGCCc -3'
miRNA:   3'- -GGCGg-AGU---AGCa---GGUCCAGCU-CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 38811 0.66 0.914357
Target:  5'- gCGCuCUCGagcUCGUCCAgcgucucgcGGUUGAGGuCCa -3'
miRNA:   3'- gGCG-GAGU---AGCAGGU---------CCAGCUCUcGG- -5'
21387 3' -56.7 NC_004812.1 + 37033 0.66 0.902459
Target:  5'- aCCGUCUg---GUCCAGGUgcUGGGAGgCCa -3'
miRNA:   3'- -GGCGGAguagCAGGUCCA--GCUCUC-GG- -5'
21387 3' -56.7 NC_004812.1 + 99220 0.66 0.914357
Target:  5'- gUGCCgggcgaacgCGUCGgCgGGGgCGGGGGCCg -3'
miRNA:   3'- gGCGGa--------GUAGCaGgUCCaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 8233 0.66 0.914357
Target:  5'- gCGCC-CggCGgCCGGGcCGGGGGUCc -3'
miRNA:   3'- gGCGGaGuaGCaGGUCCaGCUCUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.