miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 2155 0.67 0.882949
Target:  5'- gCCGCCUCGcUCGccCCGGGaCGcccGGCCc -3'
miRNA:   3'- -GGCGGAGU-AGCa-GGUCCaGCuc-UCGG- -5'
21387 3' -56.7 NC_004812.1 + 3074 0.71 0.682637
Target:  5'- gCCGCCgcgcgCGUCgGUCCAGG-CGGGcggGGCg -3'
miRNA:   3'- -GGCGGa----GUAG-CAGGUCCaGCUC---UCGg -5'
21387 3' -56.7 NC_004812.1 + 3957 0.67 0.876015
Target:  5'- gCCGCCagcccgggCA-CGgcggCCAGGUCGccgccGAGCCc -3'
miRNA:   3'- -GGCGGa-------GUaGCa---GGUCCAGCu----CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 4611 0.7 0.712135
Target:  5'- gCGCCgCGUCGcCCAGcUCGGGcGCCc -3'
miRNA:   3'- gGCGGaGUAGCaGGUCcAGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 4677 0.67 0.882949
Target:  5'- gCGCCUCGUCcaccUCCGGcG-CGccccAGAGCCc -3'
miRNA:   3'- gGCGGAGUAGc---AGGUC-CaGC----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 4828 0.67 0.88967
Target:  5'- -gGCCUCGUCGgcgUCCAGGggcacGGCCc -3'
miRNA:   3'- ggCGGAGUAGC---AGGUCCagcucUCGG- -5'
21387 3' -56.7 NC_004812.1 + 5329 0.68 0.821961
Target:  5'- uCCGCCggggCGcCGcCCGGGgucggCGGGGGCg -3'
miRNA:   3'- -GGCGGa---GUaGCaGGUCCa----GCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 5886 0.67 0.882949
Target:  5'- gCCgGCCUCAUauacccCGUCCGccGG-CGggcGGAGCCg -3'
miRNA:   3'- -GG-CGGAGUA------GCAGGU--CCaGC---UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 6250 0.7 0.741047
Target:  5'- gCCGUCUCG-CGcCCGcGGUCGggggGGAGCUa -3'
miRNA:   3'- -GGCGGAGUaGCaGGU-CCAGC----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 7727 0.67 0.876016
Target:  5'- -gGUCUCcgCG-CCGGG-CGAG-GCCg -3'
miRNA:   3'- ggCGGAGuaGCaGGUCCaGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 8233 0.66 0.914357
Target:  5'- gCGCC-CggCGgCCGGGcCGGGGGUCc -3'
miRNA:   3'- gGCGGaGuaGCaGGUCCaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 8378 0.69 0.778285
Target:  5'- gCCGCCggggccCGggGUCCGGGggcgcggCGGGGGCUc -3'
miRNA:   3'- -GGCGGa-----GUagCAGGUCCa------GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 8741 0.72 0.622781
Target:  5'- aCGCCUCGaCGgccccgaccccCCAGGcagccgCGAGAGCCu -3'
miRNA:   3'- gGCGGAGUaGCa----------GGUCCa-----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 8841 0.66 0.896174
Target:  5'- -aGCCUCGgcgaccccgCGUCCcg--CGGGAGCCc -3'
miRNA:   3'- ggCGGAGUa--------GCAGGuccaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 9075 0.67 0.882949
Target:  5'- cCCGCCgcc-CGUCCAGG-CGGcGGCg -3'
miRNA:   3'- -GGCGGaguaGCAGGUCCaGCUcUCGg -5'
21387 3' -56.7 NC_004812.1 + 10353 0.66 0.914357
Target:  5'- gCCGUCUCGUCGUCgcucuccgugUAGuacgccUCGGGGGUCu -3'
miRNA:   3'- -GGCGGAGUAGCAG----------GUCc-----AGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 10594 0.74 0.524223
Target:  5'- cCCGCCUCuUCcUCCccGUCGuuAGAGCCg -3'
miRNA:   3'- -GGCGGAGuAGcAGGucCAGC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 11141 0.67 0.868148
Target:  5'- gCCGUagagCUCGUCGUCggccaggcgaaugUAGGUCG-GuGCCa -3'
miRNA:   3'- -GGCG----GAGUAGCAG-------------GUCCAGCuCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 11302 0.66 0.902459
Target:  5'- gCGCCgcgCGgggCGcCgCGGGgCGGGGGCCg -3'
miRNA:   3'- gGCGGa--GUa--GCaG-GUCCaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 11434 0.67 0.882949
Target:  5'- aCCGCCgg--CGggaGGGUgcCGGGAGCCg -3'
miRNA:   3'- -GGCGGaguaGCaggUCCA--GCUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.