miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 155205 0.66 0.919967
Target:  5'- gCCGCC--GUCGgggCCGGGccgCGaAGAGCg -3'
miRNA:   3'- -GGCGGagUAGCa--GGUCCa--GC-UCUCGg -5'
21387 3' -56.7 NC_004812.1 + 155136 0.73 0.573008
Target:  5'- uCCGCggCggCGgggggCCGGGUCGAGGGCg -3'
miRNA:   3'- -GGCGgaGuaGCa----GGUCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 153750 0.75 0.432179
Target:  5'- gCCGCCUCGUCGUCguGGaCGccGuGCCc -3'
miRNA:   3'- -GGCGGAGUAGCAGguCCaGCu-CuCGG- -5'
21387 3' -56.7 NC_004812.1 + 151406 0.71 0.65278
Target:  5'- uCgGCCUCGgaGUCgGGGUCG-GAGUCg -3'
miRNA:   3'- -GgCGGAGUagCAGgUCCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 151346 0.67 0.871038
Target:  5'- cCCGCCUCcgUGcCCcugccgcgcguguguGGGUCuugugcuucucccGGGAGCCc -3'
miRNA:   3'- -GGCGGAGuaGCaGG---------------UCCAG-------------CUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 150617 0.67 0.876016
Target:  5'- gCGCCgacgCG-CGuUCCGGGgCGuGGGCCg -3'
miRNA:   3'- gGCGGa---GUaGC-AGGUCCaGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 149766 0.7 0.721849
Target:  5'- gCCGCCUCGcCGaCCg---CGAGGGCCg -3'
miRNA:   3'- -GGCGGAGUaGCaGGuccaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 148538 0.69 0.759882
Target:  5'- gCCGCCgggCG-CGgCgGGGUCGcGGGCCg -3'
miRNA:   3'- -GGCGGa--GUaGCaGgUCCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 148196 0.69 0.787303
Target:  5'- gCgGCCUCA-----CGGGUCGAGGGCUg -3'
miRNA:   3'- -GgCGGAGUagcagGUCCAGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 147981 0.66 0.919967
Target:  5'- uCCGUgCUCAUgGcgCCGGG-CGgcGGGGCCg -3'
miRNA:   3'- -GGCG-GAGUAgCa-GGUCCaGC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 147203 0.68 0.846252
Target:  5'- gCGCgUUGUCGuuUCCAGGgCGuuGGCCg -3'
miRNA:   3'- gGCGgAGUAGC--AGGUCCaGCucUCGG- -5'
21387 3' -56.7 NC_004812.1 + 146767 0.68 0.804931
Target:  5'- gUCGgCgugagCGUCGUCgAGGcccaaCGAGGGCCg -3'
miRNA:   3'- -GGCgGa----GUAGCAGgUCCa----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 146490 0.68 0.846252
Target:  5'- -gGCCUCA-CGcugaacgCCAGGcCGuGGGCCu -3'
miRNA:   3'- ggCGGAGUaGCa------GGUCCaGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 145801 0.66 0.902459
Target:  5'- gCGCCUCGggcUCGgugugggcggCgGGGUCGGcGGCCc -3'
miRNA:   3'- gGCGGAGU---AGCa---------GgUCCAGCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 145546 0.67 0.868874
Target:  5'- cCCGgUUCGcgcUgGUCCcgGGGUCGGGcGCCa -3'
miRNA:   3'- -GGCgGAGU---AgCAGG--UCCAGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 144687 0.68 0.830233
Target:  5'- -gGCCgUCGUCGUCCGGcagacccCGuGGGCCu -3'
miRNA:   3'- ggCGG-AGUAGCAGGUCca-----GCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 142967 0.7 0.741047
Target:  5'- aCGuCCUCcgCGUgUGGGUCGAGGGg- -3'
miRNA:   3'- gGC-GGAGuaGCAgGUCCAGCUCUCgg -5'
21387 3' -56.7 NC_004812.1 + 141557 0.66 0.914357
Target:  5'- gCCGCCagUCcgCcUCCAGGUCccgguGAGCg -3'
miRNA:   3'- -GGCGG--AGuaGcAGGUCCAGcu---CUCGg -5'
21387 3' -56.7 NC_004812.1 + 141443 0.71 0.69252
Target:  5'- gCGCCgaCGgaggCgGUCCAGGUCGugcggGGAGCCc -3'
miRNA:   3'- gGCGGa-GUa---G-CAGGUCCAGC-----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 140644 0.68 0.804931
Target:  5'- gCCGCCggccgCGgggCGUCC-GGUCGcccGGCCg -3'
miRNA:   3'- -GGCGGa----GUa--GCAGGuCCAGCuc-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.