miRNA display CGI


Results 1 - 20 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 137968 0.71 0.682637
Target:  5'- gCC-CCUCGUCGgggCgGGGUCGGGGGg- -3'
miRNA:   3'- -GGcGGAGUAGCa--GgUCCAGCUCUCgg -5'
21387 3' -56.7 NC_004812.1 + 139138 0.71 0.642786
Target:  5'- aCCGCggCAUcCG-CCGcGGUCGAGAGCg -3'
miRNA:   3'- -GGCGgaGUA-GCaGGU-CCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 45006 0.71 0.651781
Target:  5'- gUGCCggaggCGUUGUUCAGGUgggccgcCGAGAGCUc -3'
miRNA:   3'- gGCGGa----GUAGCAGGUCCA-------GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 151406 0.71 0.65278
Target:  5'- uCgGCCUCGgaGUCgGGGUCG-GAGUCg -3'
miRNA:   3'- -GgCGGAGUagCAGgUCCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 84462 0.71 0.65278
Target:  5'- cCCGCCUCuggguUCGUUCGGcUCGcuAGAGUCu -3'
miRNA:   3'- -GGCGGAGu----AGCAGGUCcAGC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 81774 0.71 0.672714
Target:  5'- uCCGCCaucugCAUCGUCgGGa--GGGGGCCg -3'
miRNA:   3'- -GGCGGa----GUAGCAGgUCcagCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 79291 0.71 0.672714
Target:  5'- cCCGuCCUCGUCGUCUucGGcGUCGuc-GCCg -3'
miRNA:   3'- -GGC-GGAGUAGCAGG--UC-CAGCucuCGG- -5'
21387 3' -56.7 NC_004812.1 + 72437 0.71 0.682637
Target:  5'- uUCGCC-CAcgggcUCGUCCGGGagGAuGGCCg -3'
miRNA:   3'- -GGCGGaGU-----AGCAGGUCCagCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 128583 0.71 0.682637
Target:  5'- gCCGCCgcgcgCGUCgGUCCAGG-CGGGcggGGCg -3'
miRNA:   3'- -GGCGGa----GUAG-CAGGUCCaGCUC---UCGg -5'
21387 3' -56.7 NC_004812.1 + 57785 0.72 0.602803
Target:  5'- gCGCCgcc-CGUCUGGGUgaCGAGGGCCu -3'
miRNA:   3'- gGCGGaguaGCAGGUCCA--GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 68252 0.72 0.592842
Target:  5'- uCgGCCUCGacguccUCGUCCAGGgcccCGGaGGCCg -3'
miRNA:   3'- -GgCGGAGU------AGCAGGUCCa---GCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 13021 0.72 0.592842
Target:  5'- gCgGCCUgAUCG-CCggGGGUCGcGGGGCCg -3'
miRNA:   3'- -GgCGGAgUAGCaGG--UCCAGC-UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 13115 0.8 0.249315
Target:  5'- cCCGCCUCGccgCGUCCAGGcCG-GGGCg -3'
miRNA:   3'- -GGCGGAGUa--GCAGGUCCaGCuCUCGg -5'
21387 3' -56.7 NC_004812.1 + 32058 0.76 0.398073
Target:  5'- aCCGCCUCggcGUCGUCgCGGGgccCGuGGGGCCc -3'
miRNA:   3'- -GGCGGAG---UAGCAG-GUCCa--GC-UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 153750 0.75 0.432179
Target:  5'- gCCGCCUCGUCGUCguGGaCGccGuGCCc -3'
miRNA:   3'- -GGCGGAGUAGCAGguCCaGCu-CuCGG- -5'
21387 3' -56.7 NC_004812.1 + 42004 0.75 0.449859
Target:  5'- gCGCCcCAUCG-CCGGGUCGAuGGCg -3'
miRNA:   3'- gGCGGaGUAGCaGGUCCAGCUcUCGg -5'
21387 3' -56.7 NC_004812.1 + 136433 0.74 0.524223
Target:  5'- gCGCC-CGcUCGcCCGGGUCGGG-GCCc -3'
miRNA:   3'- gGCGGaGU-AGCaGGUCCAGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 10594 0.74 0.524223
Target:  5'- cCCGCCUCuUCcUCCccGUCGuuAGAGCCg -3'
miRNA:   3'- -GGCGGAGuAGcAGGucCAGC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 124235 0.73 0.573008
Target:  5'- uCCGCggCggCGgggggCCGGGUCGAGGGCg -3'
miRNA:   3'- -GGCGgaGuaGCa----GGUCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 12155 0.73 0.576963
Target:  5'- cCCGCUcaauacacaaugagCA-CGUCCGGGUCacgGAGGGCCg -3'
miRNA:   3'- -GGCGGa-------------GUaGCAGGUCCAG---CUCUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.