Results 1 - 20 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 134329 | 1.14 | 0.001548 |
Target: 5'- aCCGCCUCAUCGUCCAGGUCGAGAGCCu -3' miRNA: 3'- -GGCGGAGUAGCAGGUCCAGCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 13041 | 0.71 | 0.65278 |
Target: 5'- uCCGUuucagCUCGUCGcCCAGGcgCGccAGGGCCg -3' miRNA: 3'- -GGCG-----GAGUAGCaGGUCCa-GC--UCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 60765 | 0.71 | 0.65278 |
Target: 5'- gCGCCUCG--GUCC-GGUUGGGGGCg -3' miRNA: 3'- gGCGGAGUagCAGGuCCAGCUCUCGg -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 138508 | 0.66 | 0.919967 |
Target: 5'- gCGCCgCGUCGUCCGcGuGUgCGGcGGCCc -3' miRNA: 3'- gGCGGaGUAGCAGGU-C-CA-GCUcUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 28242 | 0.75 | 0.432179 |
Target: 5'- gCCGCCUCGUCGUCguGGaCGccGuGCCc -3' miRNA: 3'- -GGCGGAGUAGCAGguCCaGCu-CuCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 46468 | 0.75 | 0.449859 |
Target: 5'- -gGCCUCcgCGUCCGGGUCGuc-GUCg -3' miRNA: 3'- ggCGGAGuaGCAGGUCCAGCucuCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 92891 | 0.74 | 0.524223 |
Target: 5'- aCCGCCUCGgcgacggCGUUCAGcuuguagcUCGAGAGCUu -3' miRNA: 3'- -GGCGGAGUa------GCAGGUCc-------AGCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 87267 | 0.73 | 0.553333 |
Target: 5'- cUCGCCaUCAUCGggcggGGGUCGAG-GCCg -3' miRNA: 3'- -GGCGG-AGUAGCagg--UCCAGCUCuCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 155136 | 0.73 | 0.573008 |
Target: 5'- uCCGCggCggCGgggggCCGGGUCGAGGGCg -3' miRNA: 3'- -GGCGgaGuaGCa----GGUCCAGCUCUCGg -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 50680 | 0.72 | 0.622781 |
Target: 5'- uCUGCCUCugugcGUCG-CCGGGgacUCGGcGAGCCg -3' miRNA: 3'- -GGCGGAG-----UAGCaGGUCC---AGCU-CUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 52001 | 0.72 | 0.592842 |
Target: 5'- uCCGCaUCAUCGUCUg---CGAGGGCCu -3' miRNA: 3'- -GGCGgAGUAGCAGGuccaGCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 60363 | 0.73 | 0.563148 |
Target: 5'- gCGCCUCGgaCGUCaGGGUCGAcguGGCCg -3' miRNA: 3'- gGCGGAGUa-GCAGgUCCAGCUc--UCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 14310 | 0.78 | 0.325775 |
Target: 5'- cCCGCCgCGccggcccggggcccUCGUCCAGGagcucCGGGAGCCg -3' miRNA: 3'- -GGCGGaGU--------------AGCAGGUCCa----GCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 106741 | 0.72 | 0.612785 |
Target: 5'- -gGCC-CAUCGUCCGGGcgCGGGGGg- -3' miRNA: 3'- ggCGGaGUAGCAGGUCCa-GCUCUCgg -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 91564 | 0.77 | 0.357949 |
Target: 5'- aCCGCgUCGUCGUaaaacagCAGGUCGAccaGGGCCc -3' miRNA: 3'- -GGCGgAGUAGCAg------GUCCAGCU---CUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 108896 | 0.73 | 0.553333 |
Target: 5'- gCCGCCUCGcgccggccgggCGcCCGGGUCGGGuaaucGCCc -3' miRNA: 3'- -GGCGGAGUa----------GCaGGUCCAGCUCu----CGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 8741 | 0.72 | 0.622781 |
Target: 5'- aCGCCUCGaCGgccccgaccccCCAGGcagccgCGAGAGCCu -3' miRNA: 3'- gGCGGAGUaGCa----------GGUCCa-----GCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 25898 | 0.71 | 0.65278 |
Target: 5'- uCgGCCUCGgaGUCgGGGUCG-GAGUCg -3' miRNA: 3'- -GgCGGAGUagCAGgUCCAGCuCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 61305 | 0.76 | 0.423492 |
Target: 5'- gCgGCCUCcgcgGUCGUUCAacgcGGUgGAGAGCCa -3' miRNA: 3'- -GgCGGAG----UAGCAGGU----CCAgCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 17902 | 0.75 | 0.449859 |
Target: 5'- cCCGCCgcgCccgcgGUCGUCCGGGcgCGAG-GCCc -3' miRNA: 3'- -GGCGGa--G-----UAGCAGGUCCa-GCUCuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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