miRNA display CGI


Results 41 - 60 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 89966 0.66 0.578547
Target:  5'- cGCCuCCCGaCGCGCCUCccgcuucGCCcGUGcCGa -3'
miRNA:   3'- -CGG-GGGC-GCGUGGAGc------CGG-CACaGCa -5'
21388 3' -63.7 NC_004812.1 + 24041 0.66 0.578547
Target:  5'- aCgCCCGCauccaGCACCgccccCGGCCG-GUCGa -3'
miRNA:   3'- cGgGGGCG-----CGUGGa----GCCGGCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 111617 0.66 0.578547
Target:  5'- cGCCUCCG-GCACCU-GGCuCGUGgccgCGn -3'
miRNA:   3'- -CGGGGGCgCGUGGAgCCG-GCACa---GCa -5'
21388 3' -63.7 NC_004812.1 + 123773 0.66 0.578547
Target:  5'- cCCCCCGacgggcggaGCGCCcCGGCCGgagccUCGg -3'
miRNA:   3'- cGGGGGCg--------CGUGGaGCCGGCac---AGCa -5'
21388 3' -63.7 NC_004812.1 + 84297 0.66 0.578547
Target:  5'- uCCCCUuCGCgggACCUCgGGCCGcGUCGc -3'
miRNA:   3'- cGGGGGcGCG---UGGAG-CCGGCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 147255 0.66 0.578547
Target:  5'- gGCCgCCGUGCGCCaCGGCCaGaUGgCGg -3'
miRNA:   3'- -CGGgGGCGCGUGGaGCCGG-C-ACaGCa -5'
21388 3' -63.7 NC_004812.1 + 23987 0.66 0.578547
Target:  5'- aCgCCCGCauccaGCACCgccccCGGCCG-GUCGa -3'
miRNA:   3'- cGgGGGCG-----CGUGGa----GCCGGCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 96537 0.66 0.569027
Target:  5'- cGCCCgCGUGCGCUcCGcccuGCCGcUGUCGc -3'
miRNA:   3'- -CGGGgGCGCGUGGaGC----CGGC-ACAGCa -5'
21388 3' -63.7 NC_004812.1 + 94517 0.66 0.569027
Target:  5'- aCCCCaUGCGCGCgUCaGGCgCGgGUCGg -3'
miRNA:   3'- cGGGG-GCGCGUGgAG-CCG-GCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 121082 0.66 0.569027
Target:  5'- cCCCCCGCGCGCCaugcugaCGGaCGgguucgaGUCGg -3'
miRNA:   3'- cGGGGGCGCGUGGa------GCCgGCa------CAGCa -5'
21388 3' -63.7 NC_004812.1 + 120156 0.66 0.569027
Target:  5'- gGCCCCCcCGCuCCUCgacaacgcGGCCGcgGUCu- -3'
miRNA:   3'- -CGGGGGcGCGuGGAG--------CCGGCa-CAGca -5'
21388 3' -63.7 NC_004812.1 + 32140 0.66 0.568077
Target:  5'- cUCCCCGCccgggcgGCGCCgCGGCCGcccGUUGg -3'
miRNA:   3'- cGGGGGCG-------CGUGGaGCCGGCa--CAGCa -5'
21388 3' -63.7 NC_004812.1 + 1239 0.66 0.568077
Target:  5'- cUCCCCGCccgggcgGCGCCgCGGCCGcccGUUGg -3'
miRNA:   3'- cGGGGGCG-------CGUGGaGCCGGCa--CAGCa -5'
21388 3' -63.7 NC_004812.1 + 53359 0.66 0.568077
Target:  5'- cGCCgCCGCGuCGCC-CGGCCGccgcuccUGcUCGc -3'
miRNA:   3'- -CGGgGGCGC-GUGGaGCCGGC-------AC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 29668 0.66 0.567128
Target:  5'- gGCCCUCGCgGCcCCggccccuccccgCGGCCGccGUCGg -3'
miRNA:   3'- -CGGGGGCG-CGuGGa-----------GCCGGCa-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 155176 0.66 0.567128
Target:  5'- gGCCCUCGCgGCcCCggccccuccccgCGGCCGccGUCGg -3'
miRNA:   3'- -CGGGGGCG-CGuGGa-----------GCCGGCa-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 28784 0.67 0.559546
Target:  5'- -gCCCCGCuCuuUUCGGCCGUGgcgCGg -3'
miRNA:   3'- cgGGGGCGcGugGAGCCGGCACa--GCa -5'
21388 3' -63.7 NC_004812.1 + 93878 0.67 0.559546
Target:  5'- aGCCCagCCGCcggucCACCUCGGCCuUGUUc- -3'
miRNA:   3'- -CGGG--GGCGc----GUGGAGCCGGcACAGca -5'
21388 3' -63.7 NC_004812.1 + 40882 0.67 0.558601
Target:  5'- cGCCUCUGUgacuccgGCGCCUU-GCCGUGUCc- -3'
miRNA:   3'- -CGGGGGCG-------CGUGGAGcCGGCACAGca -5'
21388 3' -63.7 NC_004812.1 + 79363 0.67 0.557655
Target:  5'- cGCCCCCGCgagggcaGCGCCccacacccccgcgUCGGCCGcGcCa- -3'
miRNA:   3'- -CGGGGGCG-------CGUGG-------------AGCCGGCaCaGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.