miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 43982 0.66 0.597684
Target:  5'- aGUCCCCGCGguCGCCcgacCGGCCGgccuccUCGg -3'
miRNA:   3'- -CGGGGGCGC--GUGGa---GCCGGCac----AGCa -5'
21388 3' -63.7 NC_004812.1 + 128513 0.66 0.597684
Target:  5'- aGUUgCCG-GC-CCaggCGGCCGUGUCGg -3'
miRNA:   3'- -CGGgGGCgCGuGGa--GCCGGCACAGCa -5'
21388 3' -63.7 NC_004812.1 + 53354 0.66 0.597684
Target:  5'- cGCCCCCGCGCGCCU--GCgCGaGaUCa- -3'
miRNA:   3'- -CGGGGGCGCGUGGAgcCG-GCaC-AGca -5'
21388 3' -63.7 NC_004812.1 + 103469 0.66 0.597684
Target:  5'- aCCCCaaCGCcauCGCCUCGGCCaccGUCGg -3'
miRNA:   3'- cGGGG--GCGc--GUGGAGCCGGca-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 127398 0.66 0.597684
Target:  5'- gGUCCCCGagcaGCACCgCGGCgagaaaguaCGUGgCGUg -3'
miRNA:   3'- -CGGGGGCg---CGUGGaGCCG---------GCACaGCA- -5'
21388 3' -63.7 NC_004812.1 + 84705 0.66 0.597684
Target:  5'- cGCCCgcggcgCCGCGcCGCC-CGGCCcgccGUCGg -3'
miRNA:   3'- -CGGG------GGCGC-GUGGaGCCGGca--CAGCa -5'
21388 3' -63.7 NC_004812.1 + 154691 0.66 0.597684
Target:  5'- cGCCCCgGCcggaGCCUCGGCCcauauacgggGUGcCGc -3'
miRNA:   3'- -CGGGGgCGcg--UGGAGCCGG----------CACaGCa -5'
21388 3' -63.7 NC_004812.1 + 17900 0.66 0.597684
Target:  5'- gGCCCgCCGCGC-CCgCGGUCGUc-CGg -3'
miRNA:   3'- -CGGG-GGCGCGuGGaGCCGGCAcaGCa -5'
21388 3' -63.7 NC_004812.1 + 86021 0.66 0.597684
Target:  5'- gGCCCCCGCcCcUCUCGGCCaacgCGg -3'
miRNA:   3'- -CGGGGGCGcGuGGAGCCGGcacaGCa -5'
21388 3' -63.7 NC_004812.1 + 151942 0.66 0.597684
Target:  5'- gGCgCCgGCGCGCgaCGGCCGg--CGa -3'
miRNA:   3'- -CGgGGgCGCGUGgaGCCGGCacaGCa -5'
21388 3' -63.7 NC_004812.1 + 121041 0.66 0.597684
Target:  5'- gGCgCCgGCGCGCgaCGGCCGg--CGa -3'
miRNA:   3'- -CGgGGgCGCGUGgaGCCGGCacaGCa -5'
21388 3' -63.7 NC_004812.1 + 104111 0.66 0.588102
Target:  5'- cGUCUCCGC-CGUCUCGGgCGUGUCc- -3'
miRNA:   3'- -CGGGGGCGcGUGGAGCCgGCACAGca -5'
21388 3' -63.7 NC_004812.1 + 96284 0.66 0.588102
Target:  5'- cGCCCCCGCGCaACCUCa-CC-UG-CGa -3'
miRNA:   3'- -CGGGGGCGCG-UGGAGccGGcACaGCa -5'
21388 3' -63.7 NC_004812.1 + 68386 0.66 0.588102
Target:  5'- cGCCCCCGC-CGCC-CaGCCGccGUCc- -3'
miRNA:   3'- -CGGGGGCGcGUGGaGcCGGCa-CAGca -5'
21388 3' -63.7 NC_004812.1 + 51856 0.66 0.588102
Target:  5'- cGUCgCCggguucaacaaGCGCACCUucugcgCGGCCGUGggcgCGUg -3'
miRNA:   3'- -CGGgGG-----------CGCGUGGA------GCCGGCACa---GCA- -5'
21388 3' -63.7 NC_004812.1 + 139767 0.66 0.588102
Target:  5'- cGCgaCCGCGCGCCUaagggcggCGGCCGccGUCu- -3'
miRNA:   3'- -CGggGGCGCGUGGA--------GCCGGCa-CAGca -5'
21388 3' -63.7 NC_004812.1 + 143327 0.66 0.588102
Target:  5'- cGCCCcgCCGCGCcgagGCCUCcGCCGccccgacGUCGg -3'
miRNA:   3'- -CGGG--GGCGCG----UGGAGcCGGCa------CAGCa -5'
21388 3' -63.7 NC_004812.1 + 98611 0.66 0.588102
Target:  5'- cGCUCCCGUG-GCCgucgCGGCCGUcgCGg -3'
miRNA:   3'- -CGGGGGCGCgUGGa---GCCGGCAcaGCa -5'
21388 3' -63.7 NC_004812.1 + 84282 0.66 0.588102
Target:  5'- cCCCCCGCGgccCGCC-CGGCCGcGcccgaUCGa -3'
miRNA:   3'- cGGGGGCGC---GUGGaGCCGGCaC-----AGCa -5'
21388 3' -63.7 NC_004812.1 + 138636 0.66 0.588102
Target:  5'- gGCUCCaCGUcggGCGCCUgaCGGCCGccGUCGc -3'
miRNA:   3'- -CGGGG-GCG---CGUGGA--GCCGGCa-CAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.