Results 21 - 40 of 252 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 47160 | 0.73 | 0.228165 |
Target: 5'- cGCCCCCGCGCcgcccucucCCUCGGCgGgccUCGg -3' miRNA: 3'- -CGGGGGCGCGu--------GGAGCCGgCac-AGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 125613 | 0.73 | 0.228165 |
Target: 5'- gGCCCCgCGCGCGCCcCGGCCc-GUCc- -3' miRNA: 3'- -CGGGG-GCGCGUGGaGCCGGcaCAGca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 104 | 0.73 | 0.228165 |
Target: 5'- gGCCCCgCGCGCGCCcCGGCCc-GUCc- -3' miRNA: 3'- -CGGGG-GCGCGUGGaGCCGGcaCAGca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 31460 | 0.73 | 0.244334 |
Target: 5'- cGCCCCgGCGCGCg-CGGCCGcGUgGa -3' miRNA: 3'- -CGGGGgCGCGUGgaGCCGGCaCAgCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 559 | 0.73 | 0.244334 |
Target: 5'- cGCCCCgGCGCGCg-CGGCCGcGUgGa -3' miRNA: 3'- -CGGGGgCGCGUGgaGCCGGCaCAgCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 126445 | 0.73 | 0.244334 |
Target: 5'- aGCCCgCCGCGCGCUccCGGCUGUGg--- -3' miRNA: 3'- -CGGG-GGCGCGUGGa-GCCGGCACagca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 89458 | 0.73 | 0.244334 |
Target: 5'- uGgCCCUGCgGCGCCUCcgGGCCGagGUCGUc -3' miRNA: 3'- -CgGGGGCG-CGUGGAG--CCGGCa-CAGCA- -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 937 | 0.73 | 0.244334 |
Target: 5'- aGCCCgCCGCGCGCUccCGGCUGUGg--- -3' miRNA: 3'- -CGGG-GGCGCGUGGa-GCCGGCACagca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 18841 | 0.72 | 0.25969 |
Target: 5'- cGCCaCCguCGCGCGCCUCGGCCcagcgggucccggggGUCGg -3' miRNA: 3'- -CGG-GG--GCGCGUGGAGCCGGca-------------CAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 150682 | 0.72 | 0.261444 |
Target: 5'- cGCCCCCGCGCuCCg-GGCgGcGUCGc -3' miRNA: 3'- -CGGGGGCGCGuGGagCCGgCaCAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 108284 | 0.72 | 0.26736 |
Target: 5'- cGCCgCCGuUGCgGCCUCGGCCGcggcGUCGg -3' miRNA: 3'- -CGGgGGC-GCG-UGGAGCCGGCa---CAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 142149 | 0.72 | 0.26736 |
Target: 5'- cGCCCCCGCGC-CCUCcGGCCa------ -3' miRNA: 3'- -CGGGGGCGCGuGGAG-CCGGcacagca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 108888 | 0.72 | 0.283248 |
Target: 5'- aGCaCCCCGC-CGCCUCGcGCCGgccgggcgcccggGUCGg -3' miRNA: 3'- -CG-GGGGCGcGUGGAGC-CGGCa------------CAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 155397 | 0.72 | 0.285757 |
Target: 5'- aGCCCCCGCgGCGCCgccccCGGCCGa----- -3' miRNA: 3'- -CGGGGGCG-CGUGGa----GCCGGCacagca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 124496 | 0.72 | 0.285757 |
Target: 5'- aGCCCCCGCgGCGCCgccccCGGCCGa----- -3' miRNA: 3'- -CGGGGGCG-CGUGGa----GCCGGCacagca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 7765 | 0.72 | 0.292108 |
Target: 5'- cCCCCCgugcguGCGCGCCgugcggcgCGGCCGUGUa-- -3' miRNA: 3'- cGGGGG------CGCGUGGa-------GCCGGCACAgca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 63080 | 0.72 | 0.292108 |
Target: 5'- cGCCgcaCCCGCGCcccGCCUCGGCCuucGUCa- -3' miRNA: 3'- -CGG---GGGCGCG---UGGAGCCGGca-CAGca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 38666 | 0.72 | 0.292108 |
Target: 5'- cCCCCCgugcguGCGCGCCgugcggcgCGGCCGUGUa-- -3' miRNA: 3'- cGGGGG------CGCGUGGa-------GCCGGCACAgca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 139905 | 0.72 | 0.298568 |
Target: 5'- gGCCCCgcggucgcuCGCGCACCcgcCGGUCGggGUCGg -3' miRNA: 3'- -CGGGG---------GCGCGUGGa--GCCGGCa-CAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 14818 | 0.72 | 0.298568 |
Target: 5'- aCCCCCGCGCGgcccgcccccCCgcgCGGCCGU-UCGa -3' miRNA: 3'- cGGGGGCGCGU----------GGa--GCCGGCAcAGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home