Results 21 - 40 of 252 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 23987 | 0.66 | 0.578547 |
Target: 5'- aCgCCCGCauccaGCACCgccccCGGCCG-GUCGa -3' miRNA: 3'- cGgGGGCG-----CGUGGa----GCCGGCaCAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 121041 | 0.66 | 0.597684 |
Target: 5'- gGCgCCgGCGCGCgaCGGCCGg--CGa -3' miRNA: 3'- -CGgGGgCGCGUGgaGCCGGCacaGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 69586 | 0.66 | 0.607289 |
Target: 5'- cGCCUCCGaGCGCgaCGGCgGUGgcccgCGg -3' miRNA: 3'- -CGGGGGCgCGUGgaGCCGgCACa----GCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 53359 | 0.66 | 0.568077 |
Target: 5'- cGCCgCCGCGuCGCC-CGGCCGccgcuccUGcUCGc -3' miRNA: 3'- -CGGgGGCGC-GUGGaGCCGGC-------AC-AGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 121082 | 0.66 | 0.569027 |
Target: 5'- cCCCCCGCGCGCCaugcugaCGGaCGgguucgaGUCGg -3' miRNA: 3'- cGGGGGCGCGUGGa------GCCgGCa------CAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 1239 | 0.66 | 0.568077 |
Target: 5'- cUCCCCGCccgggcgGCGCCgCGGCCGcccGUUGg -3' miRNA: 3'- cGGGGGCG-------CGUGGaGCCGGCa--CAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 155100 | 0.66 | 0.607289 |
Target: 5'- uGCCCUCGCGCGgCggcgCGGgCCG-GcCGg -3' miRNA: 3'- -CGGGGGCGCGUgGa---GCC-GGCaCaGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 136499 | 0.66 | 0.616911 |
Target: 5'- uCCCCCGCGCGCCgcugcgcgCGGCgCGc----- -3' miRNA: 3'- cGGGGGCGCGUGGa-------GCCG-GCacagca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 106327 | 0.66 | 0.616911 |
Target: 5'- cGCCCCCGCGCagACC-CG-CCGguUCGc -3' miRNA: 3'- -CGGGGGCGCG--UGGaGCcGGCacAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 104111 | 0.66 | 0.588102 |
Target: 5'- cGUCUCCGC-CGUCUCGGgCGUGUCc- -3' miRNA: 3'- -CGGGGGCGcGUGGAGCCgGCACAGca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 99688 | 0.66 | 0.613061 |
Target: 5'- cGCCCCCGCcucCGCCagggacucggucgCGGCCGcGgCGUa -3' miRNA: 3'- -CGGGGGCGc--GUGGa------------GCCGGCaCaGCA- -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 155176 | 0.66 | 0.567128 |
Target: 5'- gGCCCUCGCgGCcCCggccccuccccgCGGCCGccGUCGg -3' miRNA: 3'- -CGGGGGCG-CGuGGa-----------GCCGGCa-CAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 36538 | 0.66 | 0.597684 |
Target: 5'- cGCCgCCGUG-GCCacggCGGCCGUGUa-- -3' miRNA: 3'- -CGGgGGCGCgUGGa---GCCGGCACAgca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 14224 | 0.66 | 0.597684 |
Target: 5'- cGCCCCCggcggccacgGCGCGCCg-GGUgaUGUCGg -3' miRNA: 3'- -CGGGGG----------CGCGUGGagCCGgcACAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 84297 | 0.66 | 0.578547 |
Target: 5'- uCCCCUuCGCgggACCUCgGGCCGcGUCGc -3' miRNA: 3'- cGGGGGcGCG---UGGAG-CCGGCaCAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 68386 | 0.66 | 0.588102 |
Target: 5'- cGCCCCCGC-CGCC-CaGCCGccGUCc- -3' miRNA: 3'- -CGGGGGCGcGUGGaGcCGGCa-CAGca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 120156 | 0.66 | 0.569027 |
Target: 5'- gGCCCCCcCGCuCCUCgacaacgcGGCCGcgGUCu- -3' miRNA: 3'- -CGGGGGcGCGuGGAG--------CCGGCa-CAGca -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 111617 | 0.66 | 0.578547 |
Target: 5'- cGCCUCCG-GCACCU-GGCuCGUGgccgCGn -3' miRNA: 3'- -CGGGGGCgCGUGGAgCCG-GCACa---GCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 96537 | 0.66 | 0.569027 |
Target: 5'- cGCCCgCGUGCGCUcCGcccuGCCGcUGUCGc -3' miRNA: 3'- -CGGGgGCGCGUGGaGC----CGGC-ACAGCa -5' |
|||||||
21388 | 3' | -63.7 | NC_004812.1 | + | 147255 | 0.66 | 0.578547 |
Target: 5'- gGCCgCCGUGCGCCaCGGCCaGaUGgCGg -3' miRNA: 3'- -CGGgGGCGCGUGGaGCCGG-C-ACaGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home