miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 8336 0.69 0.408622
Target:  5'- cGCCgCCGCGCuGCCgggcgCGGCCGccccaccgcGUCGg -3'
miRNA:   3'- -CGGgGGCGCG-UGGa----GCCGGCa--------CAGCa -5'
21388 3' -63.7 NC_004812.1 + 8477 0.68 0.450531
Target:  5'- cGCCCCCGCGUGCCUauGCUaaUGgCGUc -3'
miRNA:   3'- -CGGGGGCGCGUGGAgcCGGc-ACaGCA- -5'
21388 3' -63.7 NC_004812.1 + 9764 0.71 0.332525
Target:  5'- gGCCCgCgGCGCGCCggCGGCCGcgcgggUGUCc- -3'
miRNA:   3'- -CGGG-GgCGCGUGGa-GCCGGC------ACAGca -5'
21388 3' -63.7 NC_004812.1 + 10326 0.66 0.607289
Target:  5'- cGUCCCaucCGCACCagaaaaucggCGGCCGUcucGUCGUc -3'
miRNA:   3'- -CGGGGgc-GCGUGGa---------GCCGGCA---CAGCA- -5'
21388 3' -63.7 NC_004812.1 + 13056 0.7 0.361674
Target:  5'- cGCCCagGCGCGCCagGGCCGccUCGUu -3'
miRNA:   3'- -CGGGggCGCGUGGagCCGGCacAGCA- -5'
21388 3' -63.7 NC_004812.1 + 14224 0.66 0.597684
Target:  5'- cGCCCCCggcggccacgGCGCGCCg-GGUgaUGUCGg -3'
miRNA:   3'- -CGGGGG----------CGCGUGGagCCGgcACAGCa -5'
21388 3' -63.7 NC_004812.1 + 14785 0.66 0.616911
Target:  5'- cGUCCCCGCcgacccGCGCCaUGGCCGag-CGg -3'
miRNA:   3'- -CGGGGGCG------CGUGGaGCCGGCacaGCa -5'
21388 3' -63.7 NC_004812.1 + 14818 0.72 0.298568
Target:  5'- aCCCCCGCGCGgcccgcccccCCgcgCGGCCGU-UCGa -3'
miRNA:   3'- cGGGGGCGCGU----------GGa--GCCGGCAcAGCa -5'
21388 3' -63.7 NC_004812.1 + 15751 0.7 0.354223
Target:  5'- cGCgCCuuGCGCGCCUgCGGCac-GUCGUu -3'
miRNA:   3'- -CG-GGggCGCGUGGA-GCCGgcaCAGCA- -5'
21388 3' -63.7 NC_004812.1 + 16136 0.69 0.408622
Target:  5'- gGCCCCCGUGgugggggCGGCCGUGcCGg -3'
miRNA:   3'- -CGGGGGCGCgugga--GCCGGCACaGCa -5'
21388 3' -63.7 NC_004812.1 + 16487 0.71 0.332525
Target:  5'- cGCCCCCGUGUccGCCacCGGCCGgggGgcgCGg -3'
miRNA:   3'- -CGGGGGCGCG--UGGa-GCCGGCa--Ca--GCa -5'
21388 3' -63.7 NC_004812.1 + 16989 0.67 0.529531
Target:  5'- cGCCCCCcgcuccgggGCGCggagucagaGCCUCGaGCCGgggggugaagggGUCGg -3'
miRNA:   3'- -CGGGGG---------CGCG---------UGGAGC-CGGCa-----------CAGCa -5'
21388 3' -63.7 NC_004812.1 + 17900 0.66 0.597684
Target:  5'- gGCCCgCCGCGC-CCgCGGUCGUc-CGg -3'
miRNA:   3'- -CGGG-GGCGCGuGGaGCCGGCAcaGCa -5'
21388 3' -63.7 NC_004812.1 + 18841 0.72 0.25969
Target:  5'- cGCCaCCguCGCGCGCCUCGGCCcagcgggucccggggGUCGg -3'
miRNA:   3'- -CGG-GG--GCGCGUGGAGCCGGca-------------CAGCa -5'
21388 3' -63.7 NC_004812.1 + 19121 0.71 0.339648
Target:  5'- gGCCCCCGC-CAgCUCGG-CGUGggCGg -3'
miRNA:   3'- -CGGGGGCGcGUgGAGCCgGCACa-GCa -5'
21388 3' -63.7 NC_004812.1 + 19817 0.68 0.494694
Target:  5'- cGCUgCUGCGCAUCUCGGCCa------ -3'
miRNA:   3'- -CGGgGGCGCGUGGAGCCGGcacagca -5'
21388 3' -63.7 NC_004812.1 + 20154 0.67 0.540723
Target:  5'- cGCCCCCGCGCGgaUUCGccuGCgGUGcCGc -3'
miRNA:   3'- -CGGGGGCGCGUg-GAGC---CGgCACaGCa -5'
21388 3' -63.7 NC_004812.1 + 20261 0.7 0.354223
Target:  5'- uCCCgCCGUGUuuUUCGGUCGUGUCGc -3'
miRNA:   3'- cGGG-GGCGCGugGAGCCGGCACAGCa -5'
21388 3' -63.7 NC_004812.1 + 20511 0.7 0.387813
Target:  5'- aGCCCCUGgGCACCcccgucgucgugcgcUCGGCCGaccUG-CGg -3'
miRNA:   3'- -CGGGGGCgCGUGG---------------AGCCGGC---ACaGCa -5'
21388 3' -63.7 NC_004812.1 + 21003 0.71 0.305139
Target:  5'- cGUCgCCGcCGCGCCUCGGCCGcgGggGUg -3'
miRNA:   3'- -CGGgGGC-GCGUGGAGCCGGCa-CagCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.