miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 104 0.73 0.228165
Target:  5'- gGCCCCgCGCGCGCCcCGGCCc-GUCc- -3'
miRNA:   3'- -CGGGG-GCGCGUGGaGCCGGcaCAGca -5'
21388 3' -63.7 NC_004812.1 + 276 0.67 0.55011
Target:  5'- uCUCCCGCGCGCgCUCcGCCGccGUCc- -3'
miRNA:   3'- cGGGGGCGCGUG-GAGcCGGCa-CAGca -5'
21388 3' -63.7 NC_004812.1 + 559 0.73 0.244334
Target:  5'- cGCCCCgGCGCGCg-CGGCCGcGUgGa -3'
miRNA:   3'- -CGGGGgCGCGUGgaGCCGGCaCAgCa -5'
21388 3' -63.7 NC_004812.1 + 803 0.76 0.16041
Target:  5'- cGCCCCCGC-CGCCgccCGGCCGgggGUCc- -3'
miRNA:   3'- -CGGGGGCGcGUGGa--GCCGGCa--CAGca -5'
21388 3' -63.7 NC_004812.1 + 937 0.73 0.244334
Target:  5'- aGCCCgCCGCGCGCUccCGGCUGUGg--- -3'
miRNA:   3'- -CGGG-GGCGCGUGGa-GCCGGCACagca -5'
21388 3' -63.7 NC_004812.1 + 1024 0.7 0.346881
Target:  5'- cGCCCCCGCGaggGCC-CGGCCGcccgCGc -3'
miRNA:   3'- -CGGGGGCGCg--UGGaGCCGGCaca-GCa -5'
21388 3' -63.7 NC_004812.1 + 1168 0.68 0.47678
Target:  5'- gGCCCCC-CGCucCCUCGucGCCGUcgccGUCGc -3'
miRNA:   3'- -CGGGGGcGCGu-GGAGC--CGGCA----CAGCa -5'
21388 3' -63.7 NC_004812.1 + 1239 0.66 0.568077
Target:  5'- cUCCCCGCccgggcgGCGCCgCGGCCGcccGUUGg -3'
miRNA:   3'- cGGGGGCG-------CGUGGaGCCGGCa--CAGCa -5'
21388 3' -63.7 NC_004812.1 + 1380 0.7 0.376901
Target:  5'- cGCCCUCGCGCACCaaGGCCcgcucuUCGc -3'
miRNA:   3'- -CGGGGGCGCGUGGagCCGGcac---AGCa -5'
21388 3' -63.7 NC_004812.1 + 1732 0.67 0.522117
Target:  5'- cGgCCCCGCGCGCCUccgCGGCCc------ -3'
miRNA:   3'- -CgGGGGCGCGUGGA---GCCGGcacagca -5'
21388 3' -63.7 NC_004812.1 + 3004 0.66 0.597684
Target:  5'- aGUUgCCG-GC-CCaggCGGCCGUGUCGg -3'
miRNA:   3'- -CGGgGGCgCGuGGa--GCCGGCACAGCa -5'
21388 3' -63.7 NC_004812.1 + 3073 0.67 0.531391
Target:  5'- gGCCgCCGCGCGCgUCGGUCcaggCGg -3'
miRNA:   3'- -CGGgGGCGCGUGgAGCCGGcacaGCa -5'
21388 3' -63.7 NC_004812.1 + 3993 0.67 0.507414
Target:  5'- aGCCCUCGgccaGCGCCUCcagcacggcgcggcaGGCCGUGagGc -3'
miRNA:   3'- -CGGGGGCg---CGUGGAG---------------CCGGCACagCa -5'
21388 3' -63.7 NC_004812.1 + 4203 0.71 0.325513
Target:  5'- cGCCCCCGCgGCGCC-CGGCCccacgCGc -3'
miRNA:   3'- -CGGGGGCG-CGUGGaGCCGGcaca-GCa -5'
21388 3' -63.7 NC_004812.1 + 5268 0.68 0.485698
Target:  5'- gGCCgCCGCGgcccCGCgCUCGGCCGacUCGg -3'
miRNA:   3'- -CGGgGGCGC----GUG-GAGCCGGCacAGCa -5'
21388 3' -63.7 NC_004812.1 + 6226 0.71 0.325513
Target:  5'- cGCCCCUGC-CGCCgcggccccgCGGCCGUcUCGc -3'
miRNA:   3'- -CGGGGGCGcGUGGa--------GCCGGCAcAGCa -5'
21388 3' -63.7 NC_004812.1 + 7462 0.67 0.531391
Target:  5'- cGCCUccgcggggaCCGCGCGCCccggCGGCCGcG-CGg -3'
miRNA:   3'- -CGGG---------GGCGCGUGGa---GCCGGCaCaGCa -5'
21388 3' -63.7 NC_004812.1 + 7765 0.72 0.292108
Target:  5'- cCCCCCgugcguGCGCGCCgugcggcgCGGCCGUGUa-- -3'
miRNA:   3'- cGGGGG------CGCGUGGa-------GCCGGCACAgca -5'
21388 3' -63.7 NC_004812.1 + 8052 0.69 0.441959
Target:  5'- cCCCCCG-GCGCC-CGGCCGgcccgCGa -3'
miRNA:   3'- cGGGGGCgCGUGGaGCCGGCaca--GCa -5'
21388 3' -63.7 NC_004812.1 + 8258 0.67 0.540723
Target:  5'- cGCCCCCGgggGCGCCgggGGCCG-GcCGa -3'
miRNA:   3'- -CGGGGGCg--CGUGGag-CCGGCaCaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.