miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 133715 0.97 0.005353
Target:  5'- cGCCCCCGCGCACCUCGGC-GUGUCGUu -3'
miRNA:   3'- -CGGGGGCGCGUGGAGCCGgCACAGCA- -5'
21388 3' -63.7 NC_004812.1 + 88389 0.81 0.067518
Target:  5'- gGCCCCCGCGCACCccCGGCCG-GcCGc -3'
miRNA:   3'- -CGGGGGCGCGUGGa-GCCGGCaCaGCa -5'
21388 3' -63.7 NC_004812.1 + 26063 0.8 0.084686
Target:  5'- cGCCCUCGCGCGCCccCGGCCcgggGUCGUc -3'
miRNA:   3'- -CGGGGGCGCGUGGa-GCCGGca--CAGCA- -5'
21388 3' -63.7 NC_004812.1 + 151572 0.8 0.084686
Target:  5'- cGCCCUCGCGCGCCccCGGCCcgggGUCGUc -3'
miRNA:   3'- -CGGGGGCGCGUGGa-GCCGGca--CAGCA- -5'
21388 3' -63.7 NC_004812.1 + 140109 0.78 0.111336
Target:  5'- cGCCCCCGCGCcCCcCGGCCgGUGgCGg -3'
miRNA:   3'- -CGGGGGCGCGuGGaGCCGG-CACaGCa -5'
21388 3' -63.7 NC_004812.1 + 77440 0.77 0.125893
Target:  5'- aGCUCCCGCaGCAgCUCGGCCGggggGcUCGUg -3'
miRNA:   3'- -CGGGGGCG-CGUgGAGCCGGCa---C-AGCA- -5'
21388 3' -63.7 NC_004812.1 + 76576 0.76 0.156606
Target:  5'- cCCCCCGCGCAUgugCUCGGCCG--UCGa -3'
miRNA:   3'- cGGGGGCGCGUG---GAGCCGGCacAGCa -5'
21388 3' -63.7 NC_004812.1 + 31704 0.76 0.16041
Target:  5'- cGCCCCCGC-CGCCgccCGGCCGgggGUCc- -3'
miRNA:   3'- -CGGGGGCGcGUGGa--GCCGGCa--CAGca -5'
21388 3' -63.7 NC_004812.1 + 803 0.76 0.16041
Target:  5'- cGCCCCCGC-CGCCgccCGGCCGgggGUCc- -3'
miRNA:   3'- -CGGGGGCGcGUGGa--GCCGGCa--CAGca -5'
21388 3' -63.7 NC_004812.1 + 153396 0.75 0.180701
Target:  5'- gGCCCgCCGCGCGCCUCGGgcCCGcUG-CGc -3'
miRNA:   3'- -CGGG-GGCGCGUGGAGCC--GGC-ACaGCa -5'
21388 3' -63.7 NC_004812.1 + 27888 0.75 0.180701
Target:  5'- gGCCCgCCGCGCGCCUCGGgcCCGcUG-CGc -3'
miRNA:   3'- -CGGG-GGCGCGUGGAGCC--GGC-ACaGCa -5'
21388 3' -63.7 NC_004812.1 + 60751 0.75 0.180701
Target:  5'- gGCCCaCCGCacccGCGCCUCGGuCCGguugggggcgcUGUCGUa -3'
miRNA:   3'- -CGGG-GGCG----CGUGGAGCC-GGC-----------ACAGCA- -5'
21388 3' -63.7 NC_004812.1 + 61025 0.75 0.180701
Target:  5'- cGCgCCCGCGCGCgggcgCGGCCGUG-CGg -3'
miRNA:   3'- -CGgGGGCGCGUGga---GCCGGCACaGCa -5'
21388 3' -63.7 NC_004812.1 + 124873 0.75 0.193942
Target:  5'- cGCCCCCGCcccGCGCCucUCGGCCGaGcUCGc -3'
miRNA:   3'- -CGGGGGCG---CGUGG--AGCCGGCaC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 131754 0.74 0.19854
Target:  5'- cGCCCCCGCagccGCGCCgcccgCGGCgCGUGcCGc -3'
miRNA:   3'- -CGGGGGCG----CGUGGa----GCCG-GCACaGCa -5'
21388 3' -63.7 NC_004812.1 + 120996 0.74 0.201816
Target:  5'- uCCCCCGCGUucggcccggcgcacGCCUCGGCgGUcgccGUCGg -3'
miRNA:   3'- cGGGGGCGCG--------------UGGAGCCGgCA----CAGCa -5'
21388 3' -63.7 NC_004812.1 + 25173 0.74 0.208024
Target:  5'- cGCCCCCGCGCuCCggGGCgGcGUCGc -3'
miRNA:   3'- -CGGGGGCGCGuGGagCCGgCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 125010 0.74 0.212417
Target:  5'- cGCCCCUGCGCGgcgcgcggcccguCCUCGcGCCGUucgacGUCGc -3'
miRNA:   3'- -CGGGGGCGCGU-------------GGAGC-CGGCA-----CAGCa -5'
21388 3' -63.7 NC_004812.1 + 137045 0.74 0.217895
Target:  5'- aCCCCaGUGCGCgUCGGCCGcGUCGc -3'
miRNA:   3'- cGGGGgCGCGUGgAGCCGGCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 125613 0.73 0.228165
Target:  5'- gGCCCCgCGCGCGCCcCGGCCc-GUCc- -3'
miRNA:   3'- -CGGGG-GCGCGUGGaGCCGGcaCAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.