miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 138636 0.66 0.588102
Target:  5'- gGCUCCaCGUcggGCGCCUgaCGGCCGccGUCGc -3'
miRNA:   3'- -CGGGG-GCG---CGUGGA--GCCGGCa-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 111241 0.66 0.597684
Target:  5'- cGCCCaCCGCuGCAUCUacgcggugCGGCCcGUGggcgCGg -3'
miRNA:   3'- -CGGG-GGCG-CGUGGA--------GCCGG-CACa---GCa -5'
21388 3' -63.7 NC_004812.1 + 69586 0.66 0.607289
Target:  5'- cGCCUCCGaGCGCgaCGGCgGUGgcccgCGg -3'
miRNA:   3'- -CGGGGGCgCGUGgaGCCGgCACa----GCa -5'
21388 3' -63.7 NC_004812.1 + 24041 0.66 0.578547
Target:  5'- aCgCCCGCauccaGCACCgccccCGGCCG-GUCGa -3'
miRNA:   3'- cGgGGGCG-----CGUGGa----GCCGGCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 1239 0.66 0.568077
Target:  5'- cUCCCCGCccgggcgGCGCCgCGGCCGcccGUUGg -3'
miRNA:   3'- cGGGGGCG-------CGUGGaGCCGGCa--CAGCa -5'
21388 3' -63.7 NC_004812.1 + 123773 0.66 0.578547
Target:  5'- cCCCCCGacgggcggaGCGCCcCGGCCGgagccUCGg -3'
miRNA:   3'- cGGGGGCg--------CGUGGaGCCGGCac---AGCa -5'
21388 3' -63.7 NC_004812.1 + 128513 0.66 0.597684
Target:  5'- aGUUgCCG-GC-CCaggCGGCCGUGUCGg -3'
miRNA:   3'- -CGGgGGCgCGuGGa--GCCGGCACAGCa -5'
21388 3' -63.7 NC_004812.1 + 143327 0.66 0.588102
Target:  5'- cGCCCcgCCGCGCcgagGCCUCcGCCGccccgacGUCGg -3'
miRNA:   3'- -CGGG--GGCGCG----UGGAGcCGGCa------CAGCa -5'
21388 3' -63.7 NC_004812.1 + 68386 0.66 0.588102
Target:  5'- cGCCCCCGC-CGCC-CaGCCGccGUCc- -3'
miRNA:   3'- -CGGGGGCGcGUGGaGcCGGCa-CAGca -5'
21388 3' -63.7 NC_004812.1 + 53359 0.66 0.568077
Target:  5'- cGCCgCCGCGuCGCC-CGGCCGccgcuccUGcUCGc -3'
miRNA:   3'- -CGGgGGCGC-GUGGaGCCGGC-------AC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 121041 0.66 0.597684
Target:  5'- gGCgCCgGCGCGCgaCGGCCGg--CGa -3'
miRNA:   3'- -CGgGGgCGCGUGgaGCCGGCacaGCa -5'
21388 3' -63.7 NC_004812.1 + 98611 0.66 0.588102
Target:  5'- cGCUCCCGUG-GCCgucgCGGCCGUcgCGg -3'
miRNA:   3'- -CGGGGGCGCgUGGa---GCCGGCAcaGCa -5'
21388 3' -63.7 NC_004812.1 + 118455 0.66 0.616911
Target:  5'- gGCCCCgGCGCGgUgcaGGCCacGUGgcgCGUg -3'
miRNA:   3'- -CGGGGgCGCGUgGag-CCGG--CACa--GCA- -5'
21388 3' -63.7 NC_004812.1 + 96284 0.66 0.588102
Target:  5'- cGCCCCCGCGCaACCUCa-CC-UG-CGa -3'
miRNA:   3'- -CGGGGGCGCG-UGGAGccGGcACaGCa -5'
21388 3' -63.7 NC_004812.1 + 96537 0.66 0.569027
Target:  5'- cGCCCgCGUGCGCUcCGcccuGCCGcUGUCGc -3'
miRNA:   3'- -CGGGgGCGCGUGGaGC----CGGC-ACAGCa -5'
21388 3' -63.7 NC_004812.1 + 147255 0.66 0.578547
Target:  5'- gGCCgCCGUGCGCCaCGGCCaGaUGgCGg -3'
miRNA:   3'- -CGGgGGCGCGUGGaGCCGG-C-ACaGCa -5'
21388 3' -63.7 NC_004812.1 + 155176 0.66 0.567128
Target:  5'- gGCCCUCGCgGCcCCggccccuccccgCGGCCGccGUCGg -3'
miRNA:   3'- -CGGGGGCG-CGuGGa-----------GCCGGCa-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 23987 0.66 0.578547
Target:  5'- aCgCCCGCauccaGCACCgccccCGGCCG-GUCGa -3'
miRNA:   3'- cGgGGGCG-----CGUGGa----GCCGGCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 14224 0.66 0.597684
Target:  5'- cGCCCCCggcggccacgGCGCGCCg-GGUgaUGUCGg -3'
miRNA:   3'- -CGGGGG----------CGCGUGGagCCGgcACAGCa -5'
21388 3' -63.7 NC_004812.1 + 36538 0.66 0.597684
Target:  5'- cGCCgCCGUG-GCCacggCGGCCGUGUa-- -3'
miRNA:   3'- -CGGgGGCGCgUGGa---GCCGGCACAgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.