miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 80981 0.71 0.332525
Target:  5'- cGCCgCgGCGCGCUggUCGGUCGUGcUCGc -3'
miRNA:   3'- -CGGgGgCGCGUGG--AGCCGGCAC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 7765 0.72 0.292108
Target:  5'- cCCCCCgugcguGCGCGCCgugcggcgCGGCCGUGUa-- -3'
miRNA:   3'- cGGGGG------CGCGUGGa-------GCCGGCACAgca -5'
21388 3' -63.7 NC_004812.1 + 63080 0.72 0.292108
Target:  5'- cGCCgcaCCCGCGCcccGCCUCGGCCuucGUCa- -3'
miRNA:   3'- -CGG---GGGCGCG---UGGAGCCGGca-CAGca -5'
21388 3' -63.7 NC_004812.1 + 14818 0.72 0.298568
Target:  5'- aCCCCCGCGCGgcccgcccccCCgcgCGGCCGU-UCGa -3'
miRNA:   3'- cGGGGGCGCGU----------GGa--GCCGGCAcAGCa -5'
21388 3' -63.7 NC_004812.1 + 112453 0.71 0.31182
Target:  5'- gGCCCCCGaGCGCCcucCGGCCGUccggCGa -3'
miRNA:   3'- -CGGGGGCgCGUGGa--GCCGGCAca--GCa -5'
21388 3' -63.7 NC_004812.1 + 38956 0.71 0.325513
Target:  5'- cUCCCCGUaggccacggGCACgUCGGCCuccGUGUCGg -3'
miRNA:   3'- cGGGGGCG---------CGUGgAGCCGG---CACAGCa -5'
21388 3' -63.7 NC_004812.1 + 6226 0.71 0.325513
Target:  5'- cGCCCCUGC-CGCCgcggccccgCGGCCGUcUCGc -3'
miRNA:   3'- -CGGGGGCGcGUGGa--------GCCGGCAcAGCa -5'
21388 3' -63.7 NC_004812.1 + 4203 0.71 0.325513
Target:  5'- cGCCCCCGCgGCGCC-CGGCCccacgCGc -3'
miRNA:   3'- -CGGGGGCG-CGUGGaGCCGGcaca-GCa -5'
21388 3' -63.7 NC_004812.1 + 9764 0.71 0.332525
Target:  5'- gGCCCgCgGCGCGCCggCGGCCGcgcgggUGUCc- -3'
miRNA:   3'- -CGGG-GgCGCGUGGa-GCCGGC------ACAGca -5'
21388 3' -63.7 NC_004812.1 + 124496 0.72 0.285757
Target:  5'- aGCCCCCGCgGCGCCgccccCGGCCGa----- -3'
miRNA:   3'- -CGGGGGCG-CGUGGa----GCCGGCacagca -5'
21388 3' -63.7 NC_004812.1 + 142149 0.72 0.26736
Target:  5'- cGCCCCCGCGC-CCUCcGGCCa------ -3'
miRNA:   3'- -CGGGGGCGCGuGGAG-CCGGcacagca -5'
21388 3' -63.7 NC_004812.1 + 150682 0.72 0.261444
Target:  5'- cGCCCCCGCGCuCCg-GGCgGcGUCGc -3'
miRNA:   3'- -CGGGGGCGCGuGGagCCGgCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 140109 0.78 0.111336
Target:  5'- cGCCCCCGCGCcCCcCGGCCgGUGgCGg -3'
miRNA:   3'- -CGGGGGCGCGuGGaGCCGG-CACaGCa -5'
21388 3' -63.7 NC_004812.1 + 77440 0.77 0.125893
Target:  5'- aGCUCCCGCaGCAgCUCGGCCGggggGcUCGUg -3'
miRNA:   3'- -CGGGGGCG-CGUgGAGCCGGCa---C-AGCA- -5'
21388 3' -63.7 NC_004812.1 + 803 0.76 0.16041
Target:  5'- cGCCCCCGC-CGCCgccCGGCCGgggGUCc- -3'
miRNA:   3'- -CGGGGGCGcGUGGa--GCCGGCa--CAGca -5'
21388 3' -63.7 NC_004812.1 + 153396 0.75 0.180701
Target:  5'- gGCCCgCCGCGCGCCUCGGgcCCGcUG-CGc -3'
miRNA:   3'- -CGGG-GGCGCGUGGAGCC--GGC-ACaGCa -5'
21388 3' -63.7 NC_004812.1 + 125613 0.73 0.228165
Target:  5'- gGCCCCgCGCGCGCCcCGGCCc-GUCc- -3'
miRNA:   3'- -CGGGG-GCGCGUGGaGCCGGcaCAGca -5'
21388 3' -63.7 NC_004812.1 + 126445 0.73 0.244334
Target:  5'- aGCCCgCCGCGCGCUccCGGCUGUGg--- -3'
miRNA:   3'- -CGGG-GGCGCGUGGa-GCCGGCACagca -5'
21388 3' -63.7 NC_004812.1 + 559 0.73 0.244334
Target:  5'- cGCCCCgGCGCGCg-CGGCCGcGUgGa -3'
miRNA:   3'- -CGGGGgCGCGUGgaGCCGGCaCAgCa -5'
21388 3' -63.7 NC_004812.1 + 18841 0.72 0.25969
Target:  5'- cGCCaCCguCGCGCGCCUCGGCCcagcgggucccggggGUCGg -3'
miRNA:   3'- -CGG-GG--GCGCGUGGAGCCGGca-------------CAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.