miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 156514 0.73 0.228165
Target:  5'- gGCCCCgCGCGCGCCcCGGCCc-GUCc- -3'
miRNA:   3'- -CGGGG-GCGCGUGGaGCCGGcaCAGca -5'
21388 3' -63.7 NC_004812.1 + 156105 0.7 0.392553
Target:  5'- cGCCCCgGC-CGCggCGGCCGUGaguUCGg -3'
miRNA:   3'- -CGGGGgCGcGUGgaGCCGGCAC---AGCa -5'
21388 3' -63.7 NC_004812.1 + 155397 0.72 0.285757
Target:  5'- aGCCCCCGCgGCGCCgccccCGGCCGa----- -3'
miRNA:   3'- -CGGGGGCG-CGUGGa----GCCGGCacagca -5'
21388 3' -63.7 NC_004812.1 + 155176 0.66 0.567128
Target:  5'- gGCCCUCGCgGCcCCggccccuccccgCGGCCGccGUCGg -3'
miRNA:   3'- -CGGGGGCG-CGuGGa-----------GCCGGCa-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 155100 0.66 0.607289
Target:  5'- uGCCCUCGCGCGgCggcgCGGgCCG-GcCGg -3'
miRNA:   3'- -CGGGGGCGCGUgGa---GCC-GGCaCaGCa -5'
21388 3' -63.7 NC_004812.1 + 154691 0.66 0.597684
Target:  5'- cGCCCCgGCcggaGCCUCGGCCcauauacgggGUGcCGc -3'
miRNA:   3'- -CGGGGgCGcg--UGGAGCCGG----------CACaGCa -5'
21388 3' -63.7 NC_004812.1 + 153981 0.7 0.384674
Target:  5'- cGCCgCCGcCGCGCCUgGGCCGcGgCGc -3'
miRNA:   3'- -CGGgGGC-GCGUGGAgCCGGCaCaGCa -5'
21388 3' -63.7 NC_004812.1 + 153893 0.67 0.512908
Target:  5'- cGCCgCgCCGUGCugGCCUcCGGCCGcGUCu- -3'
miRNA:   3'- -CGG-G-GGCGCG--UGGA-GCCGGCaCAGca -5'
21388 3' -63.7 NC_004812.1 + 153396 0.75 0.180701
Target:  5'- gGCCCgCCGCGCGCCUCGGgcCCGcUG-CGc -3'
miRNA:   3'- -CGGG-GGCGCGUGGAGCC--GGC-ACaGCa -5'
21388 3' -63.7 NC_004812.1 + 151971 0.68 0.450531
Target:  5'- gGCCgCCgGCGCGCCcgCGcCCGUGUgGg -3'
miRNA:   3'- -CGG-GGgCGCGUGGa-GCcGGCACAgCa -5'
21388 3' -63.7 NC_004812.1 + 151942 0.66 0.597684
Target:  5'- gGCgCCgGCGCGCgaCGGCCGg--CGa -3'
miRNA:   3'- -CGgGGgCGCGUGgaGCCGGCacaGCa -5'
21388 3' -63.7 NC_004812.1 + 151636 0.69 0.39813
Target:  5'- gGCCCCCcgGCGCgcagagaacacaggACCgCGGCUGUGaUCGa -3'
miRNA:   3'- -CGGGGG--CGCG--------------UGGaGCCGGCAC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 151572 0.8 0.084686
Target:  5'- cGCCCUCGCGCGCCccCGGCCcgggGUCGUc -3'
miRNA:   3'- -CGGGGGCGCGUGGa-GCCGGca--CAGCA- -5'
21388 3' -63.7 NC_004812.1 + 151112 0.67 0.55011
Target:  5'- uUCCCCGCGgcCGCCgccgCcGCCGUGUCc- -3'
miRNA:   3'- cGGGGGCGC--GUGGa---GcCGGCACAGca -5'
21388 3' -63.7 NC_004812.1 + 150682 0.72 0.261444
Target:  5'- cGCCCCCGCGCuCCg-GGCgGcGUCGc -3'
miRNA:   3'- -CGGGGGCGCGuGGagCCGgCaCAGCa -5'
21388 3' -63.7 NC_004812.1 + 150549 0.7 0.384674
Target:  5'- aCCCCC-CGCGCCUgcGCgGUGUCGa -3'
miRNA:   3'- cGGGGGcGCGUGGAgcCGgCACAGCa -5'
21388 3' -63.7 NC_004812.1 + 148668 0.67 0.512908
Target:  5'- cCCCCCGgaCGCGCCcccCGGCCGcGcCGg -3'
miRNA:   3'- cGGGGGC--GCGUGGa--GCCGGCaCaGCa -5'
21388 3' -63.7 NC_004812.1 + 148412 0.68 0.485698
Target:  5'- gGCCCCCGgcCGC-UCUCGGCCGgacccCGg -3'
miRNA:   3'- -CGGGGGC--GCGuGGAGCCGGCaca--GCa -5'
21388 3' -63.7 NC_004812.1 + 147255 0.66 0.578547
Target:  5'- gGCCgCCGUGCGCCaCGGCCaGaUGgCGg -3'
miRNA:   3'- -CGGgGGCGCGUGGaGCCGG-C-ACaGCa -5'
21388 3' -63.7 NC_004812.1 + 146334 0.69 0.425095
Target:  5'- cGCCggcaaaCGCGCGCCgUCGGCUGcGUCGc -3'
miRNA:   3'- -CGGgg----GCGCGUGG-AGCCGGCaCAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.