miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 35631 0.66 0.929028
Target:  5'- gCGgggGAGGGuugacguGCCGCGGGCGCGcgcgGGGGu -3'
miRNA:   3'- gGUa--UUCUC-------CGGCGCCUGCGCa---UCUU- -5'
21388 5' -54.8 NC_004812.1 + 135978 0.66 0.92419
Target:  5'- cUCGgAGGAGGCgGUGcGGCGCGUgacGGAc -3'
miRNA:   3'- -GGUaUUCUCCGgCGC-CUGCGCA---UCUu -5'
21388 5' -54.8 NC_004812.1 + 125288 0.66 0.92419
Target:  5'- gCGcGAGAGcGCCGCGcGcggaaggccugcGCGCGUGGGGg -3'
miRNA:   3'- gGUaUUCUC-CGGCGC-C------------UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 107938 0.66 0.92419
Target:  5'- cCCcgAGGAGGCCggccaucgcgcgGCGaGGCGCG-GGAu -3'
miRNA:   3'- -GGuaUUCUCCGG------------CGC-CUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 52638 0.66 0.92419
Target:  5'- aCCGUGucGAugucGGCgaaGCGGAgCGCGUGGAGc -3'
miRNA:   3'- -GGUAUu-CU----CCGg--CGCCU-GCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 156189 0.66 0.92419
Target:  5'- gCGcGAGAGcGCCGCGcGcggaaggccugcGCGCGUGGGGg -3'
miRNA:   3'- gGUaUUCUC-CGGCGC-C------------UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 87378 0.67 0.918583
Target:  5'- gCCGUGaucgcccccccGGGGGCCccguGgGGGCGCG-AGAAg -3'
miRNA:   3'- -GGUAU-----------UCUCCGG----CgCCUGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 87747 0.67 0.918583
Target:  5'- -----cGGGGCCGCGGAccgaCGCGggcgAGGu -3'
miRNA:   3'- gguauuCUCCGGCGCCU----GCGCa---UCUu -5'
21388 5' -54.8 NC_004812.1 + 7959 0.67 0.918583
Target:  5'- uCCGgGGGGGGCCGaGaGACGCGgAGGc -3'
miRNA:   3'- -GGUaUUCUCCGGCgC-CUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 81128 0.67 0.918583
Target:  5'- gCCGcuGGAccuGGCCGCGGcCGCGgagcAGAc -3'
miRNA:   3'- -GGUauUCU---CCGGCGCCuGCGCa---UCUu -5'
21388 5' -54.8 NC_004812.1 + 137136 0.67 0.918583
Target:  5'- cCCGUGcggagGGAGGgCGCGGuCGCGg---- -3'
miRNA:   3'- -GGUAU-----UCUCCgGCGCCuGCGCaucuu -5'
21388 5' -54.8 NC_004812.1 + 51682 0.67 0.918583
Target:  5'- uCCAaAGGGGGCCuCGGuacCGCGUgccaGGAAg -3'
miRNA:   3'- -GGUaUUCUCCGGcGCCu--GCGCA----UCUU- -5'
21388 5' -54.8 NC_004812.1 + 14459 0.67 0.918583
Target:  5'- cCCGUGuggccGGAGGgCGCGGGgGCG-GGGc -3'
miRNA:   3'- -GGUAU-----UCUCCgGCGCCUgCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 93577 0.67 0.912734
Target:  5'- gCCuccccGGGGGCCaagcgcgcgcucGCGGACGCGgcGGc -3'
miRNA:   3'- -GGuau--UCUCCGG------------CGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 125364 0.67 0.912734
Target:  5'- -aGUGAG-GGUgGCGaGCGCGUGGAc -3'
miRNA:   3'- ggUAUUCuCCGgCGCcUGCGCAUCUu -5'
21388 5' -54.8 NC_004812.1 + 5810 0.67 0.912734
Target:  5'- -----cGGGGCUGCgGGGCGCGgcGGg -3'
miRNA:   3'- gguauuCUCCGGCG-CCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 25858 0.67 0.912734
Target:  5'- gCCAUGAGGGGCCuGgGGuugGCGgcGGc -3'
miRNA:   3'- -GGUAUUCUCCGG-CgCCug-CGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 67314 0.67 0.912734
Target:  5'- gCUcgGGGAGGCgagCGCGGGCGCucacAGAAc -3'
miRNA:   3'- -GGuaUUCUCCG---GCGCCUGCGca--UCUU- -5'
21388 5' -54.8 NC_004812.1 + 36711 0.67 0.912734
Target:  5'- -----cGGGGCUGCgGGGCGCGgcGGg -3'
miRNA:   3'- gguauuCUCCGGCG-CCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 156265 0.67 0.912734
Target:  5'- -aGUGAG-GGUgGCGaGCGCGUGGAc -3'
miRNA:   3'- ggUAUUCuCCGgCGCcUGCGCAUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.