Results 21 - 40 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21388 | 5' | -54.8 | NC_004812.1 | + | 35999 | 0.66 | 0.943738 |
Target: 5'- aCgAUGAGgcgcuccAGGCUGCGGugGCGg---- -3' miRNA: 3'- -GgUAUUC-------UCCGGCGCCugCGCaucuu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 68459 | 0.66 | 0.939553 |
Target: 5'- cCCGguGGuGGCCGCGGcGCgcacgaugGCGUAGGc -3' miRNA: 3'- -GGUauUCuCCGGCGCC-UG--------CGCAUCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 108009 | 0.66 | 0.934675 |
Target: 5'- gUCGUccGGAuGGCCGCGGcCGCGUcgccgccgguGGAGg -3' miRNA: 3'- -GGUAu-UCU-CCGGCGCCuGCGCA----------UCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 122542 | 0.66 | 0.934675 |
Target: 5'- -aGUcGGGGGCgGgGGGCGCGgggGGGGg -3' miRNA: 3'- ggUAuUCUCCGgCgCCUGCGCa--UCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 128570 | 0.66 | 0.934675 |
Target: 5'- gCAggaagGAGAGGCCGCcGcGCGCGUcGGu -3' miRNA: 3'- gGUa----UUCUCCGGCG-CcUGCGCAuCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 38637 | 0.66 | 0.934675 |
Target: 5'- gCCGggcGAGGCCGgGGGCGCc----- -3' miRNA: 3'- -GGUauuCUCCGGCgCCUGCGcaucuu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 35662 | 0.66 | 0.934675 |
Target: 5'- ---aGAGAGGCgGagaCGGGCGCGguggGGGAg -3' miRNA: 3'- gguaUUCUCCGgC---GCCUGCGCa---UCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 153443 | 0.66 | 0.934675 |
Target: 5'- -aGUcGGGGGCgGgGGGCGCGgggGGGGg -3' miRNA: 3'- ggUAuUCUCCGgCgCCUGCGCa--UCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 71399 | 0.66 | 0.934675 |
Target: 5'- ----cGGGGGUCgcaGCGGGCGCGggGGAAg -3' miRNA: 3'- gguauUCUCCGG---CGCCUGCGCa-UCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 15740 | 0.66 | 0.934675 |
Target: 5'- ---cGAGGGGCCGCGGGgGCc----- -3' miRNA: 3'- gguaUUCUCCGGCGCCUgCGcaucuu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 7736 | 0.66 | 0.934675 |
Target: 5'- gCCGggcGAGGCCGgGGGCGCc----- -3' miRNA: 3'- -GGUauuCUCCGGCgCCUGCGcaucuu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 4761 | 0.66 | 0.934675 |
Target: 5'- ---aGAGAGGCgGagaCGGGCGCGguggGGGAg -3' miRNA: 3'- gguaUUCUCCGgC---GCCUGCGCa---UCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 3061 | 0.66 | 0.934675 |
Target: 5'- gCAggaagGAGAGGCCGCcGcGCGCGUcGGu -3' miRNA: 3'- gGUa----UUCUCCGGCG-CcUGCGCAuCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 86761 | 0.66 | 0.929554 |
Target: 5'- gCCAUGgcgcAGcGGCgaCGCGGGCGCGaGGGc -3' miRNA: 3'- -GGUAU----UCuCCG--GCGCCUGCGCaUCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 94418 | 0.66 | 0.929554 |
Target: 5'- gCCG--GGGGGCCGaauCGGugGCGcGGGc -3' miRNA: 3'- -GGUauUCUCCGGC---GCCugCGCaUCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 105043 | 0.66 | 0.929554 |
Target: 5'- gCgAUGGGAggcgccgcuccGGCCGCGGGCGCa----- -3' miRNA: 3'- -GgUAUUCU-----------CCGGCGCCUGCGcaucuu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 44448 | 0.66 | 0.929554 |
Target: 5'- gUcgGAGAGgcggagcauGCCGCGGGCGCGgguGGu -3' miRNA: 3'- gGuaUUCUC---------CGGCGCCUGCGCau-CUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 80618 | 0.66 | 0.929554 |
Target: 5'- uCgGUGGGGGGuCCGCGGugGag-AGGGg -3' miRNA: 3'- -GgUAUUCUCC-GGCGCCugCgcaUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 113806 | 0.66 | 0.929554 |
Target: 5'- -aGUAcaGGGCCGUGGGCGUGgccuccggAGAGa -3' miRNA: 3'- ggUAUucUCCGGCGCCUGCGCa-------UCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 62255 | 0.66 | 0.929554 |
Target: 5'- aCCAgcgcgccGGGGCCGCGccGCGCGcGGAGa -3' miRNA: 3'- -GGUauu----CUCCGGCGCc-UGCGCaUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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