miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 107938 0.66 0.92419
Target:  5'- cCCcgAGGAGGCCggccaucgcgcgGCGaGGCGCG-GGAu -3'
miRNA:   3'- -GGuaUUCUCCGG------------CGC-CUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 125288 0.66 0.92419
Target:  5'- gCGcGAGAGcGCCGCGcGcggaaggccugcGCGCGUGGGGg -3'
miRNA:   3'- gGUaUUCUC-CGGCGC-C------------UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 35662 0.66 0.934675
Target:  5'- ---aGAGAGGCgGagaCGGGCGCGguggGGGAg -3'
miRNA:   3'- gguaUUCUCCGgC---GCCUGCGCa---UCUU- -5'
21388 5' -54.8 NC_004812.1 + 38637 0.66 0.934675
Target:  5'- gCCGggcGAGGCCGgGGGCGCc----- -3'
miRNA:   3'- -GGUauuCUCCGGCgCCUGCGcaucuu -5'
21388 5' -54.8 NC_004812.1 + 114487 0.66 0.944191
Target:  5'- gCCGggggAAG-GGCgGCGGGCGaCGgcGGAc -3'
miRNA:   3'- -GGUa---UUCuCCGgCGCCUGC-GCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 156189 0.66 0.92419
Target:  5'- gCGcGAGAGcGCCGCGcGcggaaggccugcGCGCGUGGGGg -3'
miRNA:   3'- gGUaUUCUC-CGGCGC-C------------UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 30415 0.66 0.944191
Target:  5'- gCCG-AGGAGGCCG-GGcCGCG-GGAGc -3'
miRNA:   3'- -GGUaUUCUCCGGCgCCuGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 82076 0.66 0.948589
Target:  5'- gCCA--GGAGGaUCGaGGGCGCGUGGc- -3'
miRNA:   3'- -GGUauUCUCC-GGCgCCUGCGCAUCuu -5'
21388 5' -54.8 NC_004812.1 + 94418 0.66 0.929554
Target:  5'- gCCG--GGGGGCCGaauCGGugGCGcGGGc -3'
miRNA:   3'- -GGUauUCUCCGGC---GCCugCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 155923 0.66 0.944191
Target:  5'- gCCG-AGGAGGCCG-GGcCGCG-GGAGc -3'
miRNA:   3'- -GGUaUUCUCCGGCgCCuGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 54430 0.66 0.948589
Target:  5'- aCCGUGgcgccGGucGGCgGCGGGCaGaCGUAGAAg -3'
miRNA:   3'- -GGUAU-----UCu-CCGgCGCCUG-C-GCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 68459 0.66 0.939553
Target:  5'- cCCGguGGuGGCCGCGGcGCgcacgaugGCGUAGGc -3'
miRNA:   3'- -GGUauUCuCCGGCGCC-UG--------CGCAUCUu -5'
21388 5' -54.8 NC_004812.1 + 153443 0.66 0.934675
Target:  5'- -aGUcGGGGGCgGgGGGCGCGgggGGGGg -3'
miRNA:   3'- ggUAuUCUCCGgCgCCUGCGCa--UCUU- -5'
21388 5' -54.8 NC_004812.1 + 3061 0.66 0.934675
Target:  5'- gCAggaagGAGAGGCCGCcGcGCGCGUcGGu -3'
miRNA:   3'- gGUa----UUCUCCGGCG-CcUGCGCAuCUu -5'
21388 5' -54.8 NC_004812.1 + 135978 0.66 0.92419
Target:  5'- cUCGgAGGAGGCgGUGcGGCGCGUgacGGAc -3'
miRNA:   3'- -GGUaUUCUCCGgCGC-CUGCGCA---UCUu -5'
21388 5' -54.8 NC_004812.1 + 105043 0.66 0.929554
Target:  5'- gCgAUGGGAggcgccgcuccGGCCGCGGGCGCa----- -3'
miRNA:   3'- -GgUAUUCU-----------CCGGCGCCUGCGcaucuu -5'
21388 5' -54.8 NC_004812.1 + 86761 0.66 0.929554
Target:  5'- gCCAUGgcgcAGcGGCgaCGCGGGCGCGaGGGc -3'
miRNA:   3'- -GGUAU----UCuCCG--GCGCCUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 62255 0.66 0.929554
Target:  5'- aCCAgcgcgccGGGGCCGCGccGCGCGcGGAGa -3'
miRNA:   3'- -GGUauu----CUCCGGCGCc-UGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 139269 0.66 0.948589
Target:  5'- uCCugagGAGcAGGCaGCGGACGCGaucGAAg -3'
miRNA:   3'- -GGua--UUC-UCCGgCGCCUGCGCau-CUU- -5'
21388 5' -54.8 NC_004812.1 + 40136 0.66 0.944191
Target:  5'- cUCcgGAGGGGCCGgGGugGCc----- -3'
miRNA:   3'- -GGuaUUCUCCGGCgCCugCGcaucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.