miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 12796 0.68 0.857525
Target:  5'- gCGUuucAGGAGGCCGaacuGCGCGUGGAc -3'
miRNA:   3'- gGUA---UUCUCCGGCgcc-UGCGCAUCUu -5'
21388 5' -54.8 NC_004812.1 + 13385 0.69 0.816142
Target:  5'- uCCGcgccGGGGGUCGgGGGCGCGgcGGGg -3'
miRNA:   3'- -GGUau--UCUCCGGCgCCUGCGCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 14459 0.67 0.918583
Target:  5'- cCCGUGuggccGGAGGgCGCGGGgGCG-GGGc -3'
miRNA:   3'- -GGUAU-----UCUCCgGCGCCUgCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 14778 0.67 0.912136
Target:  5'- gCUcgAAGAccgGGCCGCGGAggcaggcCGCGgGGAGg -3'
miRNA:   3'- -GGuaUUCU---CCGGCGCCU-------GCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 15740 0.66 0.934675
Target:  5'- ---cGAGGGGCCGCGGGgGCc----- -3'
miRNA:   3'- gguaUUCUCCGGCGCCUgCGcaucuu -5'
21388 5' -54.8 NC_004812.1 + 15932 0.71 0.731725
Target:  5'- -----uGGGGUCGCGGggucACGCGUAGAc -3'
miRNA:   3'- gguauuCUCCGGCGCC----UGCGCAUCUu -5'
21388 5' -54.8 NC_004812.1 + 16503 0.71 0.730734
Target:  5'- aCCGgccGGGGGgCGCGGgggcgaugcgcucACGCGUGGGAg -3'
miRNA:   3'- -GGUau-UCUCCgGCGCC-------------UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 16757 0.75 0.498531
Target:  5'- gCCcc-GGGGGCCGCGGgcccgaagACGCGUGGGg -3'
miRNA:   3'- -GGuauUCUCCGGCGCC--------UGCGCAUCUu -5'
21388 5' -54.8 NC_004812.1 + 18085 0.75 0.478336
Target:  5'- gCCAUGGGGGGCgagccguCGUGGuACGUGUGGGAg -3'
miRNA:   3'- -GGUAUUCUCCG-------GCGCC-UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 18436 0.68 0.849635
Target:  5'- gCGgcGGGGGCCGCGuccgguGGCGCGgcGGGg -3'
miRNA:   3'- gGUauUCUCCGGCGC------CUGCGCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 20315 0.69 0.82479
Target:  5'- uCCAgcgcccGGGGCCGC-GACGCGUcGAGu -3'
miRNA:   3'- -GGUauu---CUCCGGCGcCUGCGCAuCUU- -5'
21388 5' -54.8 NC_004812.1 + 25858 0.67 0.912734
Target:  5'- gCCAUGAGGGGCCuGgGGuugGCGgcGGc -3'
miRNA:   3'- -GGUAUUCUCCGG-CgCCug-CGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 26046 0.67 0.893751
Target:  5'- -----cGGGGCCGgGGGCGCGgcGc- -3'
miRNA:   3'- gguauuCUCCGGCgCCUGCGCauCuu -5'
21388 5' -54.8 NC_004812.1 + 28881 0.69 0.82479
Target:  5'- gCGUGcGcuGGGCCGCGGGcCGCGgcGAc -3'
miRNA:   3'- gGUAUuC--UCCGGCGCCU-GCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 29526 0.67 0.906644
Target:  5'- gCCGUGcggGGGGGaCCcggGCGGcucgcGCGCGUAGGGg -3'
miRNA:   3'- -GGUAU---UCUCC-GG---CGCC-----UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 30333 0.68 0.865207
Target:  5'- cCCAgAAGGGGcCCGCGG-CGCcgGGAGg -3'
miRNA:   3'- -GGUaUUCUCC-GGCGCCuGCGcaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 30415 0.66 0.944191
Target:  5'- gCCG-AGGAGGCCG-GGcCGCG-GGAGc -3'
miRNA:   3'- -GGUaUUCUCCGGCgCCuGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 30614 0.68 0.872677
Target:  5'- gCCGggagAAGGGGUgacgggccgCGCGGACGCGgggcgcgGGAc -3'
miRNA:   3'- -GGUa---UUCUCCG---------GCGCCUGCGCa------UCUu -5'
21388 5' -54.8 NC_004812.1 + 30788 0.66 0.944191
Target:  5'- cCCGccUGcGGGGCCGCGGGC-CGaGGGc -3'
miRNA:   3'- -GGU--AUuCUCCGGCGCCUGcGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 30864 0.75 0.488866
Target:  5'- gCCAUGGGGGGCCGaggGGGCGCGc---- -3'
miRNA:   3'- -GGUAUUCUCCGGCg--CCUGCGCaucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.