miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 48 0.72 0.640194
Target:  5'- ------cGGGCCGCGGGCGCGgcGGc -3'
miRNA:   3'- gguauucUCCGGCGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 575 0.67 0.900316
Target:  5'- gCCGcguGGA-GCCGCGGGCGCGg---- -3'
miRNA:   3'- -GGUau-UCUcCGGCGCCUGCGCaucuu -5'
21388 5' -54.8 NC_004812.1 + 1428 0.69 0.82479
Target:  5'- gCCGcgggGAGGGGCCGgGGcCGCGaGGGc -3'
miRNA:   3'- -GGUa---UUCUCCGGCgCCuGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 2132 0.67 0.906644
Target:  5'- cCCAguccgGGGAGGCCccGCGGGCGgGg---- -3'
miRNA:   3'- -GGUa----UUCUCCGG--CGCCUGCgCaucuu -5'
21388 5' -54.8 NC_004812.1 + 3061 0.66 0.934675
Target:  5'- gCAggaagGAGAGGCCGCcGcGCGCGUcGGu -3'
miRNA:   3'- gGUa----UUCUCCGGCG-CcUGCGCAuCUu -5'
21388 5' -54.8 NC_004812.1 + 3483 0.73 0.61956
Target:  5'- gCCGUcAGcgcggcGGGCCGCGGGCGCGggcccgGGGc -3'
miRNA:   3'- -GGUAuUC------UCCGGCGCCUGCGCa-----UCUu -5'
21388 5' -54.8 NC_004812.1 + 3892 0.69 0.816142
Target:  5'- gCAgccAGAGG-CGCGGGCGCGgcGGc -3'
miRNA:   3'- gGUau-UCUCCgGCGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 4761 0.66 0.934675
Target:  5'- ---aGAGAGGCgGagaCGGGCGCGguggGGGAg -3'
miRNA:   3'- gguaUUCUCCGgC---GCCUGCGCa---UCUU- -5'
21388 5' -54.8 NC_004812.1 + 4856 0.79 0.296761
Target:  5'- gCCGggGAGGGGCCGCGGcccGCGCG-AGAAa -3'
miRNA:   3'- -GGUa-UUCUCCGGCGCC---UGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 5640 0.67 0.900316
Target:  5'- gCCGggcccGGGGUCGcCGGGCGCGagGGGAg -3'
miRNA:   3'- -GGUauu--CUCCGGC-GCCUGCGCa-UCUU- -5'
21388 5' -54.8 NC_004812.1 + 5810 0.67 0.912734
Target:  5'- -----cGGGGCUGCgGGGCGCGgcGGg -3'
miRNA:   3'- gguauuCUCCGGCG-CCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 5869 0.68 0.865207
Target:  5'- aCAUGggcgcgggccGGGGGgCGCGGGCGCGggcucAGGGg -3'
miRNA:   3'- gGUAU----------UCUCCgGCGCCUGCGCa----UCUU- -5'
21388 5' -54.8 NC_004812.1 + 5962 0.72 0.660804
Target:  5'- gCCcgGGGAGGCCGCGGGgG-GgcGAGu -3'
miRNA:   3'- -GGuaUUCUCCGGCGCCUgCgCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 6046 0.68 0.849635
Target:  5'- gCCGUAGGgcggcgaggggaAGGCgGCGGAgGCGaAGGGg -3'
miRNA:   3'- -GGUAUUC------------UCCGgCGCCUgCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 7271 0.71 0.741581
Target:  5'- aCGgggAGGGGGCgGCGGcCGCGUGuGAGg -3'
miRNA:   3'- gGUa--UUCUCCGgCGCCuGCGCAU-CUU- -5'
21388 5' -54.8 NC_004812.1 + 7736 0.66 0.934675
Target:  5'- gCCGggcGAGGCCGgGGGCGCc----- -3'
miRNA:   3'- -GGUauuCUCCGGCgCCUGCGcaucuu -5'
21388 5' -54.8 NC_004812.1 + 7959 0.67 0.918583
Target:  5'- uCCGgGGGGGGCCGaGaGACGCGgAGGc -3'
miRNA:   3'- -GGUaUUCUCCGGCgC-CUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 8381 0.66 0.948589
Target:  5'- gCCGgggcccGGGGuCCGgGGGCGCGgcGGGg -3'
miRNA:   3'- -GGUauu---CUCC-GGCgCCUGCGCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 8602 0.69 0.815268
Target:  5'- gCCGcccGGAGGCCGCgccucccgguaauGGACGCG-AGGGg -3'
miRNA:   3'- -GGUau-UCUCCGGCG-------------CCUGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 8640 0.82 0.201285
Target:  5'- gCCAUGagcacGGAGcGCCGCGGGgGCGUGGAGa -3'
miRNA:   3'- -GGUAU-----UCUC-CGGCGCCUgCGCAUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.