miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 116491 0.7 0.779937
Target:  5'- cUCcgGAGGGGCCGgGGGuCGCGgacGGAc -3'
miRNA:   3'- -GGuaUUCUCCGGCgCCU-GCGCa--UCUu -5'
21388 5' -54.8 NC_004812.1 + 64126 0.72 0.681319
Target:  5'- aCGgggGGGAGGaCGCGGACGCGaucgGGGAc -3'
miRNA:   3'- gGUa--UUCUCCgGCGCCUGCGCa---UCUU- -5'
21388 5' -54.8 NC_004812.1 + 68404 0.72 0.681319
Target:  5'- gCCGUccGGGGCCGCGGcucgcccCGCGgccgAGAGg -3'
miRNA:   3'- -GGUAuuCUCCGGCGCCu------GCGCa---UCUU- -5'
21388 5' -54.8 NC_004812.1 + 103745 0.71 0.708739
Target:  5'- cCCGUGGGcgcggaugucuaugGGGCCGCGGucggGCGUGUGGc- -3'
miRNA:   3'- -GGUAUUC--------------UCCGGCGCC----UGCGCAUCuu -5'
21388 5' -54.8 NC_004812.1 + 105641 0.71 0.721782
Target:  5'- ---aGGGAGGCCGCGGAggcugGCGUccAGAGg -3'
miRNA:   3'- gguaUUCUCCGGCGCCUg----CGCA--UCUU- -5'
21388 5' -54.8 NC_004812.1 + 111975 0.71 0.721782
Target:  5'- gUCGgagAAGGGGCCGCGGccccccaaGCGCGgGGGg -3'
miRNA:   3'- -GGUa--UUCUCCGGCGCC--------UGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 7271 0.71 0.741581
Target:  5'- aCGgggAGGGGGCgGCGGcCGCGUGuGAGg -3'
miRNA:   3'- gGUa--UUCUCCGgCGCCuGCGCAU-CUU- -5'
21388 5' -54.8 NC_004812.1 + 122357 0.7 0.751339
Target:  5'- cCCGgcGGGGGCCG-GGGCGCG-GGGc -3'
miRNA:   3'- -GGUauUCUCCGGCgCCUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 123810 0.7 0.760991
Target:  5'- cCCAUAuacGGGGuGCCGCGGGCGgGgcccGGGc -3'
miRNA:   3'- -GGUAU---UCUC-CGGCGCCUGCgCa---UCUu -5'
21388 5' -54.8 NC_004812.1 + 110097 0.72 0.671077
Target:  5'- cCCGUGggcccccccGGGGGgCGCGGgagaaaACGCGUGGGAg -3'
miRNA:   3'- -GGUAU---------UCUCCgGCGCC------UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 60472 0.72 0.671077
Target:  5'- cCCGaagAGGAGGCCGgccaGGGCGCGguuGAAg -3'
miRNA:   3'- -GGUa--UUCUCCGGCg---CCUGCGCau-CUU- -5'
21388 5' -54.8 NC_004812.1 + 93540 0.72 0.660804
Target:  5'- gCCGgAGGGGGCCGUGGGgGCGgagccAGAc -3'
miRNA:   3'- -GGUaUUCUCCGGCGCCUgCGCa----UCUu -5'
21388 5' -54.8 NC_004812.1 + 30864 0.75 0.488866
Target:  5'- gCCAUGGGGGGCCGaggGGGCGCGc---- -3'
miRNA:   3'- -GGUAUUCUCCGGCg--CCUGCGCaucuu -5'
21388 5' -54.8 NC_004812.1 + 16757 0.75 0.498531
Target:  5'- gCCcc-GGGGGCCGCGGgcccgaagACGCGUGGGg -3'
miRNA:   3'- -GGuauUCUCCGGCGCC--------UGCGCAUCUu -5'
21388 5' -54.8 NC_004812.1 + 101963 0.75 0.508282
Target:  5'- gCGUcAGGGGCCGCGGACGCc----- -3'
miRNA:   3'- gGUAuUCUCCGGCGCCUGCGcaucuu -5'
21388 5' -54.8 NC_004812.1 + 44087 0.74 0.558124
Target:  5'- cCCGc---AGGaCCGCGGugGCGUAGAAc -3'
miRNA:   3'- -GGUauucUCC-GGCGCCugCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 128991 0.73 0.61956
Target:  5'- gCCGUcAGcgcggcGGGCCGCGGGCGCGggcccgGGGc -3'
miRNA:   3'- -GGUAuUC------UCCGGCGCCUGCGCa-----UCUu -5'
21388 5' -54.8 NC_004812.1 + 48 0.72 0.640194
Target:  5'- ------cGGGCCGCGGGCGCGgcGGc -3'
miRNA:   3'- gguauucUCCGGCGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 156458 0.72 0.640194
Target:  5'- ------cGGGCCGCGGGCGCGgcGGc -3'
miRNA:   3'- gguauucUCCGGCGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 5962 0.72 0.660804
Target:  5'- gCCcgGGGAGGCCGCGGGgG-GgcGAGu -3'
miRNA:   3'- -GGuaUUCUCCGGCGCCUgCgCauCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.