Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21388 | 5' | -54.8 | NC_004812.1 | + | 133748 | 1.08 | 0.004296 |
Target: 5'- gCCAUAAGAGGCCGCGGACGCGUAGAAg -3' miRNA: 3'- -GGUAUUCUCCGGCGCCUGCGCAUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 38172 | 0.71 | 0.741581 |
Target: 5'- aCGgggAGGGGGCgGCGGcCGCGUGuGAGg -3' miRNA: 3'- gGUa--UUCUCCGgCGCCuGCGCAU-CUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 154711 | 0.7 | 0.760991 |
Target: 5'- cCCAUAuacGGGGuGCCGCGGGCGgGgcccGGGc -3' miRNA: 3'- -GGUAU---UCUC-CGGCGCCUGCgCa---UCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 139269 | 0.66 | 0.948589 |
Target: 5'- uCCugagGAGcAGGCaGCGGACGCGaucGAAg -3' miRNA: 3'- -GGua--UUC-UCCGgCGCCUGCGCau-CUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 81767 | 0.75 | 0.508282 |
Target: 5'- cUCGcuGGAGGCCGCGGAgGCcgaGUGGGAc -3' miRNA: 3'- -GGUauUCUCCGGCGCCUgCG---CAUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 115913 | 0.74 | 0.558124 |
Target: 5'- cCCu--GGGGGaCCGCGGGCuCGUGGAAg -3' miRNA: 3'- -GGuauUCUCC-GGCGCCUGcGCAUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 3483 | 0.73 | 0.61956 |
Target: 5'- gCCGUcAGcgcggcGGGCCGCGGGCGCGggcccgGGGc -3' miRNA: 3'- -GGUAuUC------UCCGGCGCCUGCGCa-----UCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 30949 | 0.72 | 0.640194 |
Target: 5'- ------cGGGCCGCGGGCGCGgcGGc -3' miRNA: 3'- gguauucUCCGGCGCCUGCGCauCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 137921 | 0.72 | 0.690501 |
Target: 5'- gCCGUcggagucgggcucGAGaAGGCgGCGGGCGcCGUGGAc -3' miRNA: 3'- -GGUA-------------UUC-UCCGgCGCCUGC-GCAUCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 51888 | 0.71 | 0.731725 |
Target: 5'- -------cGGCCGUGGGCGCGUGGc- -3' miRNA: 3'- gguauucuCCGGCGCCUGCGCAUCuu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 84399 | 0.71 | 0.71176 |
Target: 5'- uCCGc--GAGGCCGCGGACGCc----- -3' miRNA: 3'- -GGUauuCUCCGGCGCCUGCGcaucuu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 89128 | 0.72 | 0.681319 |
Target: 5'- cCCGcGGGcgccAGcCCGCGGACGCGUGGGGa -3' miRNA: 3'- -GGUaUUC----UCcGGCGCCUGCGCAUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 8640 | 0.82 | 0.201285 |
Target: 5'- gCCAUGagcacGGAGcGCCGCGGGgGCGUGGAGa -3' miRNA: 3'- -GGUAU-----UCUC-CGGCGCCUgCGCAUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 16503 | 0.71 | 0.730734 |
Target: 5'- aCCGgccGGGGGgCGCGGgggcgaugcgcucACGCGUGGGAg -3' miRNA: 3'- -GGUau-UCUCCgGCGCC-------------UGCGCAUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 35757 | 0.79 | 0.296761 |
Target: 5'- gCCGggGAGGGGCCGCGGcccGCGCG-AGAAa -3' miRNA: 3'- -GGUa-UUCUCCGGCGCC---UGCGCaUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 70018 | 0.72 | 0.650507 |
Target: 5'- aCCAUGGccccGCCGCGGGCGgGUGGGGu -3' miRNA: 3'- -GGUAUUcuc-CGGCGCCUGCgCAUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 15932 | 0.71 | 0.731725 |
Target: 5'- -----uGGGGUCGCGGggucACGCGUAGAc -3' miRNA: 3'- gguauuCUCCGGCGCC----UGCGCAUCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 153258 | 0.7 | 0.751339 |
Target: 5'- cCCGgcGGGGGCCG-GGGCGCG-GGGc -3' miRNA: 3'- -GGUauUCUCCGGCgCCUGCGCaUCUu -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 18085 | 0.75 | 0.478336 |
Target: 5'- gCCAUGGGGGGCgagccguCGUGGuACGUGUGGGAg -3' miRNA: 3'- -GGUAUUCUCCG-------GCGCC-UGCGCAUCUU- -5' |
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21388 | 5' | -54.8 | NC_004812.1 | + | 36863 | 0.73 | 0.61956 |
Target: 5'- gCCcgGGGAGGCCGCGGgggggcgaguACGCG-GGGu -3' miRNA: 3'- -GGuaUUCUCCGGCGCC----------UGCGCaUCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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