miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 133748 1.08 0.004296
Target:  5'- gCCAUAAGAGGCCGCGGACGCGUAGAAg -3'
miRNA:   3'- -GGUAUUCUCCGGCGCCUGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 8640 0.82 0.201285
Target:  5'- gCCAUGagcacGGAGcGCCGCGGGgGCGUGGAGa -3'
miRNA:   3'- -GGUAU-----UCUC-CGGCGCCUgCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 35757 0.79 0.296761
Target:  5'- gCCGggGAGGGGCCGCGGcccGCGCG-AGAAa -3'
miRNA:   3'- -GGUa-UUCUCCGGCGCC---UGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 4856 0.79 0.296761
Target:  5'- gCCGggGAGGGGCCGCGGcccGCGCG-AGAAa -3'
miRNA:   3'- -GGUa-UUCUCCGGCGCC---UGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 18085 0.75 0.478336
Target:  5'- gCCAUGGGGGGCgagccguCGUGGuACGUGUGGGAg -3'
miRNA:   3'- -GGUAUUCUCCG-------GCGCC-UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 30864 0.75 0.488866
Target:  5'- gCCAUGGGGGGCCGaggGGGCGCGc---- -3'
miRNA:   3'- -GGUAUUCUCCGGCg--CCUGCGCaucuu -5'
21388 5' -54.8 NC_004812.1 + 16757 0.75 0.498531
Target:  5'- gCCcc-GGGGGCCGCGGgcccgaagACGCGUGGGg -3'
miRNA:   3'- -GGuauUCUCCGGCGCC--------UGCGCAUCUu -5'
21388 5' -54.8 NC_004812.1 + 81767 0.75 0.508282
Target:  5'- cUCGcuGGAGGCCGCGGAgGCcgaGUGGGAc -3'
miRNA:   3'- -GGUauUCUCCGGCGCCUgCG---CAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 101963 0.75 0.508282
Target:  5'- gCGUcAGGGGCCGCGGACGCc----- -3'
miRNA:   3'- gGUAuUCUCCGGCGCCUGCGcaucuu -5'
21388 5' -54.8 NC_004812.1 + 44087 0.74 0.558124
Target:  5'- cCCGc---AGGaCCGCGGugGCGUAGAAc -3'
miRNA:   3'- -GGUauucUCC-GGCGCCugCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 115913 0.74 0.558124
Target:  5'- cCCu--GGGGGaCCGCGGGCuCGUGGAAg -3'
miRNA:   3'- -GGuauUCUCC-GGCGCCUGcGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 36863 0.73 0.61956
Target:  5'- gCCcgGGGAGGCCGCGGgggggcgaguACGCG-GGGu -3'
miRNA:   3'- -GGuaUUCUCCGGCGCC----------UGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 3483 0.73 0.61956
Target:  5'- gCCGUcAGcgcggcGGGCCGCGGGCGCGggcccgGGGc -3'
miRNA:   3'- -GGUAuUC------UCCGGCGCCUGCGCa-----UCUu -5'
21388 5' -54.8 NC_004812.1 + 128991 0.73 0.61956
Target:  5'- gCCGUcAGcgcggcGGGCCGCGGGCGCGggcccgGGGc -3'
miRNA:   3'- -GGUAuUC------UCCGGCGCCUGCGCa-----UCUu -5'
21388 5' -54.8 NC_004812.1 + 30949 0.72 0.640194
Target:  5'- ------cGGGCCGCGGGCGCGgcGGc -3'
miRNA:   3'- gguauucUCCGGCGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 156458 0.72 0.640194
Target:  5'- ------cGGGCCGCGGGCGCGgcGGc -3'
miRNA:   3'- gguauucUCCGGCGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 48 0.72 0.640194
Target:  5'- ------cGGGCCGCGGGCGCGgcGGc -3'
miRNA:   3'- gguauucUCCGGCGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 70018 0.72 0.650507
Target:  5'- aCCAUGGccccGCCGCGGGCGgGUGGGGu -3'
miRNA:   3'- -GGUAUUcuc-CGGCGCCUGCgCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 93540 0.72 0.660804
Target:  5'- gCCGgAGGGGGCCGUGGGgGCGgagccAGAc -3'
miRNA:   3'- -GGUaUUCUCCGGCGCCUgCGCa----UCUu -5'
21388 5' -54.8 NC_004812.1 + 5962 0.72 0.660804
Target:  5'- gCCcgGGGAGGCCGCGGGgG-GgcGAGu -3'
miRNA:   3'- -GGuaUUCUCCGGCGCCUgCgCauCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.