miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 125288 0.66 0.92419
Target:  5'- gCGcGAGAGcGCCGCGcGcggaaggccugcGCGCGUGGGGg -3'
miRNA:   3'- gGUaUUCUC-CGGCGC-C------------UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 44448 0.66 0.929554
Target:  5'- gUcgGAGAGgcggagcauGCCGCGGGCGCGgguGGu -3'
miRNA:   3'- gGuaUUCUC---------CGGCGCCUGCGCau-CUu -5'
21388 5' -54.8 NC_004812.1 + 35999 0.66 0.943738
Target:  5'- aCgAUGAGgcgcuccAGGCUGCGGugGCGg---- -3'
miRNA:   3'- -GgUAUUC-------UCCGGCGCCugCGCaucuu -5'
21388 5' -54.8 NC_004812.1 + 108009 0.66 0.934675
Target:  5'- gUCGUccGGAuGGCCGCGGcCGCGUcgccgccgguGGAGg -3'
miRNA:   3'- -GGUAu-UCU-CCGGCGCCuGCGCA----------UCUU- -5'
21388 5' -54.8 NC_004812.1 + 71399 0.66 0.934675
Target:  5'- ----cGGGGGUCgcaGCGGGCGCGggGGAAg -3'
miRNA:   3'- gguauUCUCCGG---CGCCUGCGCa-UCUU- -5'
21388 5' -54.8 NC_004812.1 + 4761 0.66 0.934675
Target:  5'- ---aGAGAGGCgGagaCGGGCGCGguggGGGAg -3'
miRNA:   3'- gguaUUCUCCGgC---GCCUGCGCa---UCUU- -5'
21388 5' -54.8 NC_004812.1 + 107938 0.66 0.92419
Target:  5'- cCCcgAGGAGGCCggccaucgcgcgGCGaGGCGCG-GGAu -3'
miRNA:   3'- -GGuaUUCUCCGG------------CGC-CUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 33948 0.66 0.944191
Target:  5'- gCCucggGGGGGGCCGgGGuCGCGg---- -3'
miRNA:   3'- -GGua--UUCUCCGGCgCCuGCGCaucuu -5'
21388 5' -54.8 NC_004812.1 + 7736 0.66 0.934675
Target:  5'- gCCGggcGAGGCCGgGGGCGCc----- -3'
miRNA:   3'- -GGUauuCUCCGGCgCCUGCGcaucuu -5'
21388 5' -54.8 NC_004812.1 + 52638 0.66 0.92419
Target:  5'- aCCGUGucGAugucGGCgaaGCGGAgCGCGUGGAGc -3'
miRNA:   3'- -GGUAUu-CU----CCGg--CGCCU-GCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 71225 0.66 0.944191
Target:  5'- ---cGGGcGGCCGCgaGGGCGCGgcgGGGAc -3'
miRNA:   3'- gguaUUCuCCGGCG--CCUGCGCa--UCUU- -5'
21388 5' -54.8 NC_004812.1 + 80618 0.66 0.929554
Target:  5'- uCgGUGGGGGGuCCGCGGugGag-AGGGg -3'
miRNA:   3'- -GgUAUUCUCC-GGCGCCugCgcaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 122542 0.66 0.934675
Target:  5'- -aGUcGGGGGCgGgGGGCGCGgggGGGGg -3'
miRNA:   3'- ggUAuUCUCCGgCgCCUGCGCa--UCUU- -5'
21388 5' -54.8 NC_004812.1 + 128570 0.66 0.934675
Target:  5'- gCAggaagGAGAGGCCGCcGcGCGCGUcGGu -3'
miRNA:   3'- gGUa----UUCUCCGGCG-CcUGCGCAuCUu -5'
21388 5' -54.8 NC_004812.1 + 48163 0.66 0.944191
Target:  5'- gCCGggcGGcGGCCGCGG-CGC-UGGAGa -3'
miRNA:   3'- -GGUau-UCuCCGGCGCCuGCGcAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 113806 0.66 0.929554
Target:  5'- -aGUAcaGGGCCGUGGGCGUGgccuccggAGAGa -3'
miRNA:   3'- ggUAUucUCCGGCGCCUGCGCa-------UCUU- -5'
21388 5' -54.8 NC_004812.1 + 30788 0.66 0.944191
Target:  5'- cCCGccUGcGGGGCCGCGGGC-CGaGGGc -3'
miRNA:   3'- -GGU--AUuCUCCGGCGCCUGcGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 35631 0.66 0.929028
Target:  5'- gCGgggGAGGGuugacguGCCGCGGGCGCGcgcgGGGGu -3'
miRNA:   3'- gGUa--UUCUC-------CGGCGCCUGCGCa---UCUU- -5'
21388 5' -54.8 NC_004812.1 + 139269 0.66 0.948589
Target:  5'- uCCugagGAGcAGGCaGCGGACGCGaucGAAg -3'
miRNA:   3'- -GGua--UUC-UCCGgCGCCUGCGCau-CUU- -5'
21388 5' -54.8 NC_004812.1 + 15740 0.66 0.934675
Target:  5'- ---cGAGGGGCCGCGGGgGCc----- -3'
miRNA:   3'- gguaUUCUCCGGCGCCUgCGcaucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.