miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 5' -54.8 NC_004812.1 + 156458 0.72 0.640194
Target:  5'- ------cGGGCCGCGGGCGCGgcGGc -3'
miRNA:   3'- gguauucUCCGGCGCCUGCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 156265 0.67 0.912734
Target:  5'- -aGUGAG-GGUgGCGaGCGCGUGGAc -3'
miRNA:   3'- ggUAUUCuCCGgCGCcUGCGCAUCUu -5'
21388 5' -54.8 NC_004812.1 + 156189 0.66 0.92419
Target:  5'- gCGcGAGAGcGCCGCGcGcggaaggccugcGCGCGUGGGGg -3'
miRNA:   3'- gGUaUUCUC-CGGCGC-C------------UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 156122 0.68 0.872677
Target:  5'- gCCGggagAAGGGGUgacgggccgCGCGGACGCGgggcgcgGGAc -3'
miRNA:   3'- -GGUa---UUCUCCG---------GCGCCUGCGCa------UCUu -5'
21388 5' -54.8 NC_004812.1 + 155923 0.66 0.944191
Target:  5'- gCCG-AGGAGGCCG-GGcCGCG-GGAGc -3'
miRNA:   3'- -GGUaUUCUCCGGCgCCuGCGCaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 155841 0.68 0.865207
Target:  5'- cCCAgAAGGGGcCCGCGG-CGCcgGGAGg -3'
miRNA:   3'- -GGUaUUCUCC-GGCGCCuGCGcaUCUU- -5'
21388 5' -54.8 NC_004812.1 + 155034 0.67 0.906644
Target:  5'- gCCGUGcggGGGGGaCCcggGCGGcucgcGCGCGUAGGGg -3'
miRNA:   3'- -GGUAU---UCUCC-GG---CGCC-----UGCGCAUCUU- -5'
21388 5' -54.8 NC_004812.1 + 154711 0.7 0.760991
Target:  5'- cCCAUAuacGGGGuGCCGCGGGCGgGgcccGGGc -3'
miRNA:   3'- -GGUAU---UCUC-CGGCGCCUGCgCa---UCUu -5'
21388 5' -54.8 NC_004812.1 + 154389 0.69 0.82479
Target:  5'- gCGUGcGcuGGGCCGCGGGcCGCGgcGAc -3'
miRNA:   3'- gGUAUuC--UCCGGCGCCU-GCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 153443 0.66 0.934675
Target:  5'- -aGUcGGGGGCgGgGGGCGCGgggGGGGg -3'
miRNA:   3'- ggUAuUCUCCGgCgCCUGCGCa--UCUU- -5'
21388 5' -54.8 NC_004812.1 + 153258 0.7 0.751339
Target:  5'- cCCGgcGGGGGCCG-GGGCGCG-GGGc -3'
miRNA:   3'- -GGUauUCUCCGGCgCCUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 152135 0.68 0.857524
Target:  5'- gUCAUccAGAGGCCGUGGGCGgGgucgccgGGGu -3'
miRNA:   3'- -GGUAu-UCUCCGGCGCCUGCgCa------UCUu -5'
21388 5' -54.8 NC_004812.1 + 151555 0.67 0.893751
Target:  5'- -----cGGGGCCGgGGGCGCGgcGc- -3'
miRNA:   3'- gguauuCUCCGGCgCCUGCGCauCuu -5'
21388 5' -54.8 NC_004812.1 + 150373 0.68 0.872677
Target:  5'- gCGcGAGAcGGCCGCGGGgcCGCGgcGGc -3'
miRNA:   3'- gGUaUUCU-CCGGCGCCU--GCGCauCUu -5'
21388 5' -54.8 NC_004812.1 + 149218 0.69 0.807324
Target:  5'- uCCGUGAGAGaGCgGCGGAgGgGgaaAGAAc -3'
miRNA:   3'- -GGUAUUCUC-CGgCGCCUgCgCa--UCUU- -5'
21388 5' -54.8 NC_004812.1 + 148514 0.69 0.82479
Target:  5'- gCCGgggGAGggggggcggcgcGGGCCGcCGGGCGCGgcGGGg -3'
miRNA:   3'- -GGUa--UUC------------UCCGGC-GCCUGCGCauCUU- -5'
21388 5' -54.8 NC_004812.1 + 148448 0.67 0.900316
Target:  5'- cCCAUGGGGGGCCccagGUGaGCGCGcGGGc -3'
miRNA:   3'- -GGUAUUCUCCGG----CGCcUGCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 139269 0.66 0.948589
Target:  5'- uCCugagGAGcAGGCaGCGGACGCGaucGAAg -3'
miRNA:   3'- -GGua--UUC-UCCGgCGCCUGCGCau-CUU- -5'
21388 5' -54.8 NC_004812.1 + 138415 0.66 0.94816
Target:  5'- --cUGGGGGGUCGCGGAgacgccgucggacCGCGgGGAc -3'
miRNA:   3'- gguAUUCUCCGGCGCCU-------------GCGCaUCUu -5'
21388 5' -54.8 NC_004812.1 + 137921 0.72 0.690501
Target:  5'- gCCGUcggagucgggcucGAGaAGGCgGCGGGCGcCGUGGAc -3'
miRNA:   3'- -GGUA-------------UUC-UCCGgCGCCUGC-GCAUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.