Results 41 - 60 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 112003 | 0.73 | 0.6323 |
Target: 5'- cGCGGgGGGcugGCGGgGAUCUGCGGUcGCu -3' miRNA: 3'- -CGUCgUCC---UGCCaCUAGACGUCGuUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 93101 | 0.73 | 0.600929 |
Target: 5'- cCAGCGGGcgcuucGCGGUG-UCggGCGGCGGCg -3' miRNA: 3'- cGUCGUCC------UGCCACuAGa-CGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 71914 | 0.74 | 0.559472 |
Target: 5'- cGCGGCGccGCGG-GcgCUGCAGCGGCg -3' miRNA: 3'- -CGUCGUccUGCCaCuaGACGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 55351 | 0.75 | 0.497992 |
Target: 5'- gGCAGCAGGGcCGGguccacgUGGUgCcGCAGCAGCg -3' miRNA: 3'- -CGUCGUCCU-GCC-------ACUA-GaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 71715 | 0.76 | 0.460303 |
Target: 5'- cGCAGCGGcGACGGUGggCgugGguGUGGCg -3' miRNA: 3'- -CGUCGUC-CUGCCACuaGa--CguCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 20418 | 0.71 | 0.755303 |
Target: 5'- uGCGGCAGGcgcuGCGGUcGAUgUGguGCGc- -3' miRNA: 3'- -CGUCGUCC----UGCCA-CUAgACguCGUug -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 5002 | 0.7 | 0.765048 |
Target: 5'- cGCcGCAGGGCGGgcgGGg--GCGGCAGg -3' miRNA: 3'- -CGuCGUCCUGCCa--CUagaCGUCGUUg -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 43 | 0.68 | 0.862035 |
Target: 5'- cGCGGCGGGccGCGGg---C-GCGGCGGCg -3' miRNA: 3'- -CGUCGUCC--UGCCacuaGaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 79610 | 0.68 | 0.862035 |
Target: 5'- uGCAGCAcGGccGCGGUGAgg-GCGGCc-- -3' miRNA: 3'- -CGUCGU-CC--UGCCACUagaCGUCGuug -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 77912 | 0.68 | 0.862035 |
Target: 5'- --cGCgAGGGCcuGGaUGcgCUGCAGCAGCg -3' miRNA: 3'- cguCG-UCCUG--CC-ACuaGACGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 123093 | 0.69 | 0.85733 |
Target: 5'- cGgGGCGGGGCcggcgcggagaguccGGUGccGUCgGCGGCGGCg -3' miRNA: 3'- -CgUCGUCCUG---------------CCAC--UAGaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 79193 | 0.69 | 0.846056 |
Target: 5'- -aGGCuGGACGGcggGGUCcacgucggGCGGCGGCg -3' miRNA: 3'- cgUCGuCCUGCCa--CUAGa-------CGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 27187 | 0.69 | 0.846056 |
Target: 5'- uCGGcCAGGACGGcccgCcGCAGCGACg -3' miRNA: 3'- cGUC-GUCCUGCCacuaGaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 20048 | 0.69 | 0.846056 |
Target: 5'- aGCAGCacguGGaGGCGGUcgcgGGUCcucgGCGGCAGCc -3' miRNA: 3'- -CGUCG----UC-CUGCCA----CUAGa---CGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 4807 | 0.69 | 0.846056 |
Target: 5'- uGguGCGGGcGCGG-GGUCgGCAcGCGGCc -3' miRNA: 3'- -CguCGUCC-UGCCaCUAGaCGU-CGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 72306 | 0.69 | 0.820584 |
Target: 5'- gGCGGgGGGACGGaucGAUCgggcGCGGCcgGGCg -3' miRNA: 3'- -CGUCgUCCUGCCa--CUAGa---CGUCG--UUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 75697 | 0.69 | 0.811723 |
Target: 5'- cCAGCAGcccccCGGUGAUgcGCAGCAGCc -3' miRNA: 3'- cGUCGUCcu---GCCACUAgaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 5385 | 0.7 | 0.802693 |
Target: 5'- cGCGGCGGGAgGGgggucggGGUCUcccagggacGCGGCGGg -3' miRNA: 3'- -CGUCGUCCUgCCa------CUAGA---------CGUCGUUg -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 43032 | 0.7 | 0.774668 |
Target: 5'- gGguGCgGGGGCGGUGGgggUGCGGgGGCg -3' miRNA: 3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 42998 | 0.7 | 0.774668 |
Target: 5'- gGguGCgGGGGCGGUGGgggUGCGGgGGCg -3' miRNA: 3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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