miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 35708 0.69 0.846056
Target:  5'- uGguGCGGGcGCGG-GGUCgGCAcGCGGCc -3'
miRNA:   3'- -CguCGUCC-UGCCaCUAGaCGU-CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 35850 0.66 0.943157
Target:  5'- cGCAGCAGcGCGG-GGUCgcugGC-GCAGg -3'
miRNA:   3'- -CGUCGUCcUGCCaCUAGa---CGuCGUUg -5'
21389 3' -54.2 NC_004812.1 + 35904 0.7 0.784156
Target:  5'- cGCcGCAGGGCGGgcgGGg--GCGGCAGu -3'
miRNA:   3'- -CGuCGUCCUGCCa--CUagaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 36286 0.7 0.802693
Target:  5'- cGCGGCGGGAgGGgggucggGGUCUcccagggacGCGGCGGg -3'
miRNA:   3'- -CGUCGUCCUgCCa------CUAGA---------CGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 36611 0.71 0.725427
Target:  5'- aCGGgGGGGCGGgGGUCUGCcGCGGg -3'
miRNA:   3'- cGUCgUCCUGCCaCUAGACGuCGUUg -5'
21389 3' -54.2 NC_004812.1 + 36714 0.67 0.922614
Target:  5'- gGCuGCGGGGCGcGgcgGGcUCUGCgggccGGCGGCg -3'
miRNA:   3'- -CGuCGUCCUGC-Ca--CU-AGACG-----UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 37268 0.66 0.951945
Target:  5'- cCAGCuGGGCGG-GG--UGCAGCGGg -3'
miRNA:   3'- cGUCGuCCUGCCaCUagACGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 38741 0.72 0.663668
Target:  5'- gGCGGCucucucGGGGCGGgGGUCggucGUAGCGGCg -3'
miRNA:   3'- -CGUCG------UCCUGCCaCUAGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 42352 0.67 0.922614
Target:  5'- cGCGGgucuuCGGGGCGGUG-UUUGUcGCGGCc -3'
miRNA:   3'- -CGUC-----GUCCUGCCACuAGACGuCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 42998 0.7 0.774668
Target:  5'- gGguGCgGGGGCGGUGGgggUGCGGgGGCg -3'
miRNA:   3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 43032 0.7 0.774668
Target:  5'- gGguGCgGGGGCGGUGGgggUGCGGgGGCg -3'
miRNA:   3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 43066 0.71 0.725427
Target:  5'- gGguGCgGGGGCGGUGGgggUGCGGgGACg -3'
miRNA:   3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 44191 0.72 0.694794
Target:  5'- uGCGGCGGG--GGUGGggcUCgGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCugCCACU---AGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 44937 0.66 0.944993
Target:  5'- -gAGCAGG-CGcGUGAUCUucguguacggauaucGgAGCAGCa -3'
miRNA:   3'- cgUCGUCCuGC-CACUAGA---------------CgUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 45323 0.66 0.947673
Target:  5'- -gAGCAGGGCGGUcuuGUUgacguaCAGCAGCu -3'
miRNA:   3'- cgUCGUCCUGCCAc--UAGac----GUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 48529 0.7 0.802693
Target:  5'- uCAGCAGGGCgaucgaggaGGUGAUCacGCAGCc-- -3'
miRNA:   3'- cGUCGUCCUG---------CCACUAGa-CGUCGuug -5'
21389 3' -54.2 NC_004812.1 + 50587 0.67 0.922614
Target:  5'- gGCGGCAGGcCGG-GAUC-GCcgGGCAc- -3'
miRNA:   3'- -CGUCGUCCuGCCaCUAGaCG--UCGUug -5'
21389 3' -54.2 NC_004812.1 + 51871 0.66 0.951945
Target:  5'- gGCGGCGGGGCGaauuUCgcccCAGCGACu -3'
miRNA:   3'- -CGUCGUCCUGCcacuAGac--GUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 55351 0.75 0.497992
Target:  5'- gGCAGCAGGGcCGGguccacgUGGUgCcGCAGCAGCg -3'
miRNA:   3'- -CGUCGUCCU-GCC-------ACUA-GaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 55867 0.68 0.891343
Target:  5'- cGCAGCAgGGGCGucgucagguGUGGUC-GUAGCAcGCg -3'
miRNA:   3'- -CGUCGU-CCUGC---------CACUAGaCGUCGU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.