miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 11931 0.66 0.938395
Target:  5'- gGCGGCGGGGCGGgGGUg-GCGGg--- -3'
miRNA:   3'- -CGUCGUCCUGCCaCUAgaCGUCguug -5'
21389 3' -54.2 NC_004812.1 + 12973 0.71 0.745445
Target:  5'- uGCGGcCAGcGACGGcaccaUGGUCUGUgacgGGCGGCg -3'
miRNA:   3'- -CGUC-GUC-CUGCC-----ACUAGACG----UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 13128 0.74 0.559472
Target:  5'- uGCGGCucGGGCGGUGGUgCcGCcGGCGACa -3'
miRNA:   3'- -CGUCGu-CCUGCCACUA-GaCG-UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 13209 0.7 0.802693
Target:  5'- uGCAcGcCGGGAUGGcGAUCUGC-GCGAUc -3'
miRNA:   3'- -CGU-C-GUCCUGCCaCUAGACGuCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 13845 0.74 0.569774
Target:  5'- gGCAGCGGGcgccCGGcgGGUagUGCAGCAGCu -3'
miRNA:   3'- -CGUCGUCCu---GCCa-CUAg-ACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 16172 0.72 0.673042
Target:  5'- cGCGGCGGuggaguuGGCGGUGGUggaguugGCGGCGGCg -3'
miRNA:   3'- -CGUCGUC-------CUGCCACUAga-----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 18435 0.66 0.933385
Target:  5'- cGCGGCGGGGgccgcgucCGGUGG-C-GCGGCGGg -3'
miRNA:   3'- -CGUCGUCCU--------GCCACUaGaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 18813 0.68 0.862035
Target:  5'- -aGGCGGGGCGG--GUgUGCGGCGGg -3'
miRNA:   3'- cgUCGUCCUGCCacUAgACGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 19029 0.67 0.922614
Target:  5'- cGCAGCGcGGGCGGcagccUCUcggccGCGGCGGCc -3'
miRNA:   3'- -CGUCGU-CCUGCCacu--AGA-----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 19394 0.69 0.837758
Target:  5'- cCAGCAGGGCcaggacggcggGGUGA-CUcagccgccGCAGCAGCc -3'
miRNA:   3'- cGUCGUCCUG-----------CCACUaGA--------CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 20048 0.69 0.846056
Target:  5'- aGCAGCacguGGaGGCGGUcgcgGGUCcucgGCGGCAGCc -3'
miRNA:   3'- -CGUCG----UC-CUGCCA----CUAGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 20418 0.71 0.755303
Target:  5'- uGCGGCAGGcgcuGCGGUcGAUgUGguGCGc- -3'
miRNA:   3'- -CGUCGUCC----UGCCA-CUAgACguCGUug -5'
21389 3' -54.2 NC_004812.1 + 21781 0.78 0.354885
Target:  5'- aGCAGCAGGACGc-GGUCggugaaGCGGCGGCa -3'
miRNA:   3'- -CGUCGUCCUGCcaCUAGa-----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 23499 0.68 0.862035
Target:  5'- uGCGGCGGGcCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCuGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 24620 0.68 0.864358
Target:  5'- uGCGGuCAGGgacACGGUcucccccugcuccguGAcuaggacguuucgUCUGCAGCAGCa -3'
miRNA:   3'- -CGUC-GUCC---UGCCA---------------CU-------------AGACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 24844 0.67 0.922614
Target:  5'- cGCGGCAcgcgccgcGGGCGGcGcggCUGCGGgGGCg -3'
miRNA:   3'- -CGUCGU--------CCUGCCaCua-GACGUCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 26681 0.66 0.943157
Target:  5'- cGCuGgAGGGCGGggcugCguagGCGGCGACg -3'
miRNA:   3'- -CGuCgUCCUGCCacua-Ga---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 27187 0.69 0.846056
Target:  5'- uCGGcCAGGACGGcccgCcGCAGCGACg -3'
miRNA:   3'- cGUC-GUCCUGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 30944 0.68 0.862035
Target:  5'- cGCGGCGGGccGCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCC--UGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 33277 0.66 0.933385
Target:  5'- -aGGCGGGACGGgugUGGUgUGUuggcccGCGACu -3'
miRNA:   3'- cgUCGUCCUGCC---ACUAgACGu-----CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.