miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 43 0.68 0.862035
Target:  5'- cGCGGCGGGccGCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCC--UGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 1242 0.67 0.922614
Target:  5'- -uGGC-GGACGGcuuGUCUGCGGCuGACu -3'
miRNA:   3'- cgUCGuCCUGCCac-UAGACGUCG-UUG- -5'
21389 3' -54.2 NC_004812.1 + 2376 0.66 0.933385
Target:  5'- -aGGCGGGACGGgugUGGUgUGUuggcccGCGACu -3'
miRNA:   3'- cgUCGUCCUGCC---ACUAgACGu-----CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 2539 0.68 0.884362
Target:  5'- gGCAGCAcGGcGCGGcGGUaCUcgcGCGGCGGCa -3'
miRNA:   3'- -CGUCGU-CC-UGCCaCUA-GA---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 3098 0.66 0.931833
Target:  5'- -gGGCGGGGCGGgggaGGcgccgccgagcuccUCgccggGCAGCGGCg -3'
miRNA:   3'- cgUCGUCCUGCCa---CU--------------AGa----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 3670 0.66 0.947673
Target:  5'- cCAGCAGGGggcgcaggcucUGGUucuggaagagcaGGUCgGCGGCGGCg -3'
miRNA:   3'- cGUCGUCCU-----------GCCA------------CUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 3920 0.68 0.891343
Target:  5'- gGCGGCGGGGCc--GcgCgGCGGCGGCa -3'
miRNA:   3'- -CGUCGUCCUGccaCuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4020 0.71 0.725427
Target:  5'- cGCGGCAGG-CcGUGAggcacUCgGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCuGcCACU-----AGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4196 0.66 0.933385
Target:  5'- cCGGCGGGaACGGcggGGaCcGCGGCGGCg -3'
miRNA:   3'- cGUCGUCC-UGCCa--CUaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4243 0.68 0.869702
Target:  5'- gGCGGCGGcGGCGGcgGcgCccgccGCGGCGGCg -3'
miRNA:   3'- -CGUCGUC-CUGCCa-CuaGa----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4307 0.66 0.943157
Target:  5'- cGCcGCAGGcUGGUGAugaggaagcccuUCUGCgcgcggucguAGCGGCg -3'
miRNA:   3'- -CGuCGUCCuGCCACU------------AGACG----------UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4807 0.69 0.846056
Target:  5'- uGguGCGGGcGCGG-GGUCgGCAcGCGGCc -3'
miRNA:   3'- -CguCGUCC-UGCCaCUAGaCGU-CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 5002 0.7 0.765048
Target:  5'- cGCcGCAGGGCGGgcgGGg--GCGGCAGg -3'
miRNA:   3'- -CGuCGUCCUGCCa--CUagaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 5385 0.7 0.802693
Target:  5'- cGCGGCGGGAgGGgggucggGGUCUcccagggacGCGGCGGg -3'
miRNA:   3'- -CGUCGUCCUgCCa------CUAGA---------CGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 5710 0.71 0.725427
Target:  5'- aCGGgGGGGCGGgGGUCUGCcGCGGg -3'
miRNA:   3'- cGUCgUCCUGCCaCUAGACGuCGUUg -5'
21389 3' -54.2 NC_004812.1 + 5813 0.67 0.922614
Target:  5'- gGCuGCGGGGCGcGgcgGGcUCUGCgggccGGCGGCg -3'
miRNA:   3'- -CGuCGUCCUGC-Ca--CU-AGACG-----UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 7840 0.72 0.663668
Target:  5'- gGCGGCucucucGGGGCGGgGGUCggucGUAGCGGCg -3'
miRNA:   3'- -CGUCG------UCCUGCCaCUAGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 10399 0.67 0.916854
Target:  5'- cCGGCGGGgugagggggaucACGGaGGUCUcggagaGCAGCGACu -3'
miRNA:   3'- cGUCGUCC------------UGCCaCUAGA------CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 10734 0.77 0.4143
Target:  5'- gGCGGCGGGGCGGcaacg-GCGGCGACg -3'
miRNA:   3'- -CGUCGUCCUGCCacuagaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 11911 0.71 0.715287
Target:  5'- cCAGCAGGcccACGGgGGUCUGcCGGaCGACg -3'
miRNA:   3'- cGUCGUCC---UGCCaCUAGAC-GUC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.