miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 133483 1.11 0.002762
Target:  5'- aGCAGCAGGACGGUGAUCUGCAGCAACc -3'
miRNA:   3'- -CGUCGUCCUGCCACUAGACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 21781 0.78 0.354885
Target:  5'- aGCAGCAGGACGc-GGUCggugaaGCGGCGGCa -3'
miRNA:   3'- -CGUCGUCCUGCcaCUAGa-----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 10734 0.77 0.4143
Target:  5'- gGCGGCGGGGCGGcaacg-GCGGCGACg -3'
miRNA:   3'- -CGUCGUCCUGCCacuagaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 71715 0.76 0.460303
Target:  5'- cGCAGCGGcGACGGUGggCgugGguGUGGCg -3'
miRNA:   3'- -CGUCGUC-CUGCCACuaGa--CguCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 55351 0.75 0.497992
Target:  5'- gGCAGCAGGGcCGGguccacgUGGUgCcGCAGCAGCg -3'
miRNA:   3'- -CGUCGUCCU-GCC-------ACUA-GaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 110267 0.74 0.545139
Target:  5'- uGCAGCAGGGCGGcucguggcgggcgGA-CUGgCGGCGGCu -3'
miRNA:   3'- -CGUCGUCCUGCCa------------CUaGAC-GUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 71914 0.74 0.559472
Target:  5'- cGCGGCGccGCGG-GcgCUGCAGCGGCg -3'
miRNA:   3'- -CGUCGUccUGCCaCuaGACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 13128 0.74 0.559472
Target:  5'- uGCGGCucGGGCGGUGGUgCcGCcGGCGACa -3'
miRNA:   3'- -CGUCGu-CCUGCCACUA-GaCG-UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 13845 0.74 0.569774
Target:  5'- gGCAGCGGGcgccCGGcgGGUagUGCAGCAGCu -3'
miRNA:   3'- -CGUCGUCCu---GCCa-CUAg-ACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 93101 0.73 0.600929
Target:  5'- cCAGCGGGcgcuucGCGGUG-UCggGCGGCGGCg -3'
miRNA:   3'- cGUCGUCC------UGCCACuAGa-CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 80456 0.73 0.611373
Target:  5'- aGgAGCuGGGCaaGGUGGUC-GCGGCGACg -3'
miRNA:   3'- -CgUCGuCCUG--CCACUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 112003 0.73 0.6323
Target:  5'- cGCGGgGGGcugGCGGgGAUCUGCGGUcGCu -3'
miRNA:   3'- -CGUCgUCC---UGCCaCUAGACGUCGuUG- -5'
21389 3' -54.2 NC_004812.1 + 143962 0.73 0.6323
Target:  5'- cGCGGCGGGcucauguCGGUGGcgCUGCAGacCGACa -3'
miRNA:   3'- -CGUCGUCCu------GCCACUa-GACGUC--GUUG- -5'
21389 3' -54.2 NC_004812.1 + 7840 0.72 0.663668
Target:  5'- gGCGGCucucucGGGGCGGgGGUCggucGUAGCGGCg -3'
miRNA:   3'- -CGUCG------UCCUGCCaCUAGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 38741 0.72 0.663668
Target:  5'- gGCGGCucucucGGGGCGGgGGUCggucGUAGCGGCg -3'
miRNA:   3'- -CGUCG------UCCUGCCaCUAGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 16172 0.72 0.673042
Target:  5'- cGCGGCGGuggaguuGGCGGUGGUggaguugGCGGCGGCg -3'
miRNA:   3'- -CGUCGUC-------CUGCCACUAga-----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 140682 0.72 0.694794
Target:  5'- cCGGCAGGGCGG-GGUCgaccGCGGCc-- -3'
miRNA:   3'- cGUCGUCCUGCCaCUAGa---CGUCGuug -5'
21389 3' -54.2 NC_004812.1 + 44191 0.72 0.694794
Target:  5'- uGCGGCGGG--GGUGGggcUCgGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCugCCACU---AGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 138286 0.71 0.705073
Target:  5'- cGCccuGCGGG-CGGUGGUC-GCGGCGGg -3'
miRNA:   3'- -CGu--CGUCCuGCCACUAGaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 139532 0.71 0.705073
Target:  5'- --cGguGGGCGGacUGGUC-GCGGCAGCg -3'
miRNA:   3'- cguCguCCUGCC--ACUAGaCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.