Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 11911 | 0.71 | 0.715287 |
Target: 5'- cCAGCAGGcccACGGgGGUCUGcCGGaCGACg -3' miRNA: 3'- cGUCGUCC---UGCCaCUAGAC-GUC-GUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 104157 | 0.71 | 0.725427 |
Target: 5'- gGCGGCAGGaggcgacgcggGCGGgggGAUggGCGGCGAUg -3' miRNA: 3'- -CGUCGUCC-----------UGCCa--CUAgaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 5710 | 0.71 | 0.725427 |
Target: 5'- aCGGgGGGGCGGgGGUCUGCcGCGGg -3' miRNA: 3'- cGUCgUCCUGCCaCUAGACGuCGUUg -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 43066 | 0.71 | 0.725427 |
Target: 5'- gGguGCgGGGGCGGUGGgggUGCGGgGACg -3' miRNA: 3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 75805 | 0.71 | 0.725427 |
Target: 5'- uGCGGCGGG-CGGccgcGAgcgGCGGCAGCg -3' miRNA: 3'- -CGUCGUCCuGCCa---CUagaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 36611 | 0.71 | 0.725427 |
Target: 5'- aCGGgGGGGCGGgGGUCUGCcGCGGg -3' miRNA: 3'- cGUCgUCCUGCCaCUAGACGuCGUUg -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 4020 | 0.71 | 0.725427 |
Target: 5'- cGCGGCAGG-CcGUGAggcacUCgGCGGCGGCg -3' miRNA: 3'- -CGUCGUCCuGcCACU-----AGaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 129529 | 0.71 | 0.725427 |
Target: 5'- cGCGGCAGG-CcGUGAggcacUCgGCGGCGGCg -3' miRNA: 3'- -CGUCGUCCuGcCACU-----AGaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 12973 | 0.71 | 0.745445 |
Target: 5'- uGCGGcCAGcGACGGcaccaUGGUCUGUgacgGGCGGCg -3' miRNA: 3'- -CGUC-GUC-CUGCC-----ACUAGACG----UCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 70915 | 0.71 | 0.75334 |
Target: 5'- cGCGGgGGGGCGGgagguggGAUCUGCcgucgggggaccGCAACc -3' miRNA: 3'- -CGUCgUCCUGCCa------CUAGACGu-----------CGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 56990 | 0.71 | 0.755303 |
Target: 5'- aGCAccuGCAGG-CGGUGGUgaGCGGgGGCc -3' miRNA: 3'- -CGU---CGUCCuGCCACUAgaCGUCgUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 20418 | 0.71 | 0.755303 |
Target: 5'- uGCGGCAGGcgcuGCGGUcGAUgUGguGCGc- -3' miRNA: 3'- -CGUCGUCC----UGCCA-CUAgACguCGUug -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 5002 | 0.7 | 0.765048 |
Target: 5'- cGCcGCAGGGCGGgcgGGg--GCGGCAGg -3' miRNA: 3'- -CGuCGUCCUGCCa--CUagaCGUCGUUg -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 42998 | 0.7 | 0.774668 |
Target: 5'- gGguGCgGGGGCGGUGGgggUGCGGgGGCg -3' miRNA: 3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 43032 | 0.7 | 0.774668 |
Target: 5'- gGguGCgGGGGCGGUGGgggUGCGGgGGCg -3' miRNA: 3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 35904 | 0.7 | 0.784156 |
Target: 5'- cGCcGCAGGGCGGgcgGGg--GCGGCAGu -3' miRNA: 3'- -CGuCGUCCUGCCa--CUagaCGUCGUUg -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 121875 | 0.7 | 0.793501 |
Target: 5'- cGCccCAGGACGGcGAUCgGCGGCuGCc -3' miRNA: 3'- -CGucGUCCUGCCaCUAGaCGUCGuUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 5385 | 0.7 | 0.802693 |
Target: 5'- cGCGGCGGGAgGGgggucggGGUCUcccagggacGCGGCGGg -3' miRNA: 3'- -CGUCGUCCUgCCa------CUAGA---------CGUCGUUg -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 48529 | 0.7 | 0.802693 |
Target: 5'- uCAGCAGGGCgaucgaggaGGUGAUCacGCAGCc-- -3' miRNA: 3'- cGUCGUCCUG---------CCACUAGa-CGUCGuug -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 13209 | 0.7 | 0.802693 |
Target: 5'- uGCAcGcCGGGAUGGcGAUCUGC-GCGAUc -3' miRNA: 3'- -CGU-C-GUCCUGCCaCUAGACGuCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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