miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 72306 0.69 0.820584
Target:  5'- gGCGGgGGGACGGaucGAUCgggcGCGGCcgGGCg -3'
miRNA:   3'- -CGUCgUCCUGCCa--CUAGa---CGUCG--UUG- -5'
21389 3' -54.2 NC_004812.1 + 129529 0.71 0.725427
Target:  5'- cGCGGCAGG-CcGUGAggcacUCgGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCuGcCACU-----AGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 70915 0.71 0.75334
Target:  5'- cGCGGgGGGGCGGgagguggGAUCUGCcgucgggggaccGCAACc -3'
miRNA:   3'- -CGUCgUCCUGCCa------CUAGACGu-----------CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 20418 0.71 0.755303
Target:  5'- uGCGGCAGGcgcuGCGGUcGAUgUGguGCGc- -3'
miRNA:   3'- -CGUCGUCC----UGCCA-CUAgACguCGUug -5'
21389 3' -54.2 NC_004812.1 + 5002 0.7 0.765048
Target:  5'- cGCcGCAGGGCGGgcgGGg--GCGGCAGg -3'
miRNA:   3'- -CGuCGUCCUGCCa--CUagaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 42998 0.7 0.774668
Target:  5'- gGguGCgGGGGCGGUGGgggUGCGGgGGCg -3'
miRNA:   3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 43032 0.7 0.774668
Target:  5'- gGguGCgGGGGCGGUGGgggUGCGGgGGCg -3'
miRNA:   3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 5385 0.7 0.802693
Target:  5'- cGCGGCGGGAgGGgggucggGGUCUcccagggacGCGGCGGg -3'
miRNA:   3'- -CGUCGUCCUgCCa------CUAGA---------CGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 75697 0.69 0.811723
Target:  5'- cCAGCAGcccccCGGUGAUgcGCAGCAGCc -3'
miRNA:   3'- cGUCGUCcu---GCCACUAgaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 75805 0.71 0.725427
Target:  5'- uGCGGCGGG-CGGccgcGAgcgGCGGCAGCg -3'
miRNA:   3'- -CGUCGUCCuGCCa---CUagaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 104157 0.71 0.725427
Target:  5'- gGCGGCAGGaggcgacgcggGCGGgggGAUggGCGGCGAUg -3'
miRNA:   3'- -CGUCGUCC-----------UGCCa--CUAgaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 5710 0.71 0.725427
Target:  5'- aCGGgGGGGCGGgGGUCUGCcGCGGg -3'
miRNA:   3'- cGUCgUCCUGCCaCUAGACGuCGUUg -5'
21389 3' -54.2 NC_004812.1 + 71715 0.76 0.460303
Target:  5'- cGCAGCGGcGACGGUGggCgugGguGUGGCg -3'
miRNA:   3'- -CGUCGUC-CUGCCACuaGa--CguCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 55351 0.75 0.497992
Target:  5'- gGCAGCAGGGcCGGguccacgUGGUgCcGCAGCAGCg -3'
miRNA:   3'- -CGUCGUCCU-GCC-------ACUA-GaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 71914 0.74 0.559472
Target:  5'- cGCGGCGccGCGG-GcgCUGCAGCGGCg -3'
miRNA:   3'- -CGUCGUccUGCCaCuaGACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 93101 0.73 0.600929
Target:  5'- cCAGCGGGcgcuucGCGGUG-UCggGCGGCGGCg -3'
miRNA:   3'- cGUCGUCC------UGCCACuAGa-CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 112003 0.73 0.6323
Target:  5'- cGCGGgGGGcugGCGGgGAUCUGCGGUcGCu -3'
miRNA:   3'- -CGUCgUCC---UGCCaCUAGACGUCGuUG- -5'
21389 3' -54.2 NC_004812.1 + 7840 0.72 0.663668
Target:  5'- gGCGGCucucucGGGGCGGgGGUCggucGUAGCGGCg -3'
miRNA:   3'- -CGUCG------UCCUGCCaCUAGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 11911 0.71 0.715287
Target:  5'- cCAGCAGGcccACGGgGGUCUGcCGGaCGACg -3'
miRNA:   3'- cGUCGUCC---UGCCaCUAGAC-GUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 43066 0.71 0.725427
Target:  5'- gGguGCgGGGGCGGUGGgggUGCGGgGACg -3'
miRNA:   3'- -CguCG-UCCUGCCACUag-ACGUCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.