miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 133483 1.11 0.002762
Target:  5'- aGCAGCAGGACGGUGAUCUGCAGCAACc -3'
miRNA:   3'- -CGUCGUCCUGCCACUAGACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 35904 0.7 0.784156
Target:  5'- cGCcGCAGGGCGGgcgGGg--GCGGCAGu -3'
miRNA:   3'- -CGuCGUCCUGCCa--CUagaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 48529 0.7 0.802693
Target:  5'- uCAGCAGGGCgaucgaggaGGUGAUCacGCAGCc-- -3'
miRNA:   3'- cGUCGUCCUG---------CCACUAGa-CGUCGuug -5'
21389 3' -54.2 NC_004812.1 + 105202 0.66 0.951945
Target:  5'- gGCGGguGGugGGcGAgcgCgccgGCGGcCGGCg -3'
miRNA:   3'- -CGUCguCCugCCaCUa--Ga---CGUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 13845 0.74 0.569774
Target:  5'- gGCAGCGGGcgccCGGcgGGUagUGCAGCAGCu -3'
miRNA:   3'- -CGUCGUCCu---GCCa-CUAg-ACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 80456 0.73 0.611373
Target:  5'- aGgAGCuGGGCaaGGUGGUC-GCGGCGACg -3'
miRNA:   3'- -CgUCGuCCUG--CCACUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 38741 0.72 0.663668
Target:  5'- gGCGGCucucucGGGGCGGgGGUCggucGUAGCGGCg -3'
miRNA:   3'- -CGUCG------UCCUGCCaCUAGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 16172 0.72 0.673042
Target:  5'- cGCGGCGGuggaguuGGCGGUGGUggaguugGCGGCGGCg -3'
miRNA:   3'- -CGUCGUC-------CUGCCACUAga-----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 138286 0.71 0.705073
Target:  5'- cGCccuGCGGG-CGGUGGUC-GCGGCGGg -3'
miRNA:   3'- -CGu--CGUCCuGCCACUAGaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 56990 0.71 0.755303
Target:  5'- aGCAccuGCAGG-CGGUGGUgaGCGGgGGCc -3'
miRNA:   3'- -CGU---CGUCCuGCCACUAgaCGUCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 36611 0.71 0.725427
Target:  5'- aCGGgGGGGCGGgGGUCUGCcGCGGg -3'
miRNA:   3'- cGUCgUCCUGCCaCUAGACGuCGUUg -5'
21389 3' -54.2 NC_004812.1 + 140682 0.72 0.694794
Target:  5'- cCGGCAGGGCGG-GGUCgaccGCGGCc-- -3'
miRNA:   3'- cGUCGUCCUGCCaCUAGa---CGUCGuug -5'
21389 3' -54.2 NC_004812.1 + 10734 0.77 0.4143
Target:  5'- gGCGGCGGGGCGGcaacg-GCGGCGACg -3'
miRNA:   3'- -CGUCGUCCUGCCacuagaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4020 0.71 0.725427
Target:  5'- cGCGGCAGG-CcGUGAggcacUCgGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCuGcCACU-----AGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 110267 0.74 0.545139
Target:  5'- uGCAGCAGGGCGGcucguggcgggcgGA-CUGgCGGCGGCu -3'
miRNA:   3'- -CGUCGUCCUGCCa------------CUaGAC-GUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 44191 0.72 0.694794
Target:  5'- uGCGGCGGG--GGUGGggcUCgGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCugCCACU---AGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 12973 0.71 0.745445
Target:  5'- uGCGGcCAGcGACGGcaccaUGGUCUGUgacgGGCGGCg -3'
miRNA:   3'- -CGUC-GUC-CUGCC-----ACUAGACG----UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 121875 0.7 0.793501
Target:  5'- cGCccCAGGACGGcGAUCgGCGGCuGCc -3'
miRNA:   3'- -CGucGUCCUGCCaCUAGaCGUCGuUG- -5'
21389 3' -54.2 NC_004812.1 + 13128 0.74 0.559472
Target:  5'- uGCGGCucGGGCGGUGGUgCcGCcGGCGACa -3'
miRNA:   3'- -CGUCGu-CCUGCCACUA-GaCG-UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 143962 0.73 0.6323
Target:  5'- cGCGGCGGGcucauguCGGUGGcgCUGCAGacCGACa -3'
miRNA:   3'- -CGUCGUCCu------GCCACUa-GACGUC--GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.