Results 1 - 20 of 142 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 73872 | 0.66 | 0.951945 |
Target: 5'- cGCGGuCAGGGCGGcGuacagcUCgGCGGCcGCg -3' miRNA: 3'- -CGUC-GUCCUGCCaCu-----AGaCGUCGuUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 45323 | 0.66 | 0.947673 |
Target: 5'- -gAGCAGGGCGGUcuuGUUgacguaCAGCAGCu -3' miRNA: 3'- cgUCGUCCUGCCAc--UAGac----GUCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 26681 | 0.66 | 0.943157 |
Target: 5'- cGCuGgAGGGCGGggcugCguagGCGGCGACg -3' miRNA: 3'- -CGuCgUCCUGCCacua-Ga---CGUCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 129705 | 0.66 | 0.933385 |
Target: 5'- cCGGCGGGaACGGcggGGaCcGCGGCGGCg -3' miRNA: 3'- cGUCGUCC-UGCCa--CUaGaCGUCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 80631 | 0.66 | 0.933385 |
Target: 5'- cGCGGUggagaGGGGCGGggaGUCcgGCAGCGGg -3' miRNA: 3'- -CGUCG-----UCCUGCCac-UAGa-CGUCGUUg -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 128607 | 0.66 | 0.931833 |
Target: 5'- -gGGCGGGGCGGgggaGGcgccgccgagcuccUCgccggGCAGCGGCg -3' miRNA: 3'- cgUCGUCCUGCCa---CU--------------AGa----CGUCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 115594 | 0.66 | 0.933385 |
Target: 5'- cGCGGCGGG-CGGcGggCUGUAGgGGg -3' miRNA: 3'- -CGUCGUCCuGCCaCuaGACGUCgUUg -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 134373 | 0.66 | 0.947673 |
Target: 5'- aGCGGUGGGAacugGAUCUGCcguacauGCGGCg -3' miRNA: 3'- -CGUCGUCCUgccaCUAGACGu------CGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 37268 | 0.66 | 0.951945 |
Target: 5'- cCAGCuGGGCGG-GG--UGCAGCGGg -3' miRNA: 3'- cGUCGuCCUGCCaCUagACGUCGUUg -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 72237 | 0.66 | 0.947673 |
Target: 5'- uGCGGCGGGGCGuccGGUCgGCGGgcGCg -3' miRNA: 3'- -CGUCGUCCUGCca-CUAGaCGUCguUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 129815 | 0.66 | 0.943157 |
Target: 5'- cGCcGCAGGcUGGUGAugaggaagcccuUCUGCgcgcggucguAGCGGCg -3' miRNA: 3'- -CGuCGUCCuGCCACU------------AGACG----------UCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 72045 | 0.66 | 0.931311 |
Target: 5'- -uGGgGGGGCGGggGGUCgggggcgcuggggGCGGCGGCu -3' miRNA: 3'- cgUCgUCCUGCCa-CUAGa------------CGUCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 146134 | 0.66 | 0.928125 |
Target: 5'- gGCGGCAGGAagagaaCGGcaccuUCgagaGCGGCGACg -3' miRNA: 3'- -CGUCGUCCU------GCCacu--AGa---CGUCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 129178 | 0.66 | 0.947673 |
Target: 5'- cCAGCAGGGggcgcaggcucUGGUucuggaagagcaGGUCgGCGGCGGCg -3' miRNA: 3'- cGUCGUCCU-----------GCCA------------CUAGaCGUCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 51871 | 0.66 | 0.951945 |
Target: 5'- gGCGGCGGGGCGaauuUCgcccCAGCGACu -3' miRNA: 3'- -CGUCGUCCUGCcacuAGac--GUCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 147410 | 0.66 | 0.927585 |
Target: 5'- cGCGGaacaGGGGuCGGUGuucgagcggcaggGUCUGUAGguGCg -3' miRNA: 3'- -CGUCg---UCCU-GCCAC-------------UAGACGUCguUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 35850 | 0.66 | 0.943157 |
Target: 5'- cGCAGCAGcGCGG-GGUCgcugGC-GCAGg -3' miRNA: 3'- -CGUCGUCcUGCCaCUAGa---CGuCGUUg -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 2376 | 0.66 | 0.933385 |
Target: 5'- -aGGCGGGACGGgugUGGUgUGUuggcccGCGACu -3' miRNA: 3'- cgUCGUCCUGCC---ACUAgACGu-----CGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 106013 | 0.66 | 0.943157 |
Target: 5'- uGCAGCGGGcCGGcgauccUGAUCgccgccaacgGC-GCGACg -3' miRNA: 3'- -CGUCGUCCuGCC------ACUAGa---------CGuCGUUG- -5' |
|||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 72926 | 0.66 | 0.938395 |
Target: 5'- uGCAGCAGGuCGGUGGcccacgUCUccacGuCGGaCGACa -3' miRNA: 3'- -CGUCGUCCuGCCACU------AGA----C-GUC-GUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home