Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21389 | 3' | -54.2 | NC_004812.1 | + | 133483 | 1.11 | 0.002762 |
Target: 5'- aGCAGCAGGACGGUGAUCUGCAGCAACc -3' miRNA: 3'- -CGUCGUCCUGCCACUAGACGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 21781 | 0.78 | 0.354885 |
Target: 5'- aGCAGCAGGACGc-GGUCggugaaGCGGCGGCa -3' miRNA: 3'- -CGUCGUCCUGCcaCUAGa-----CGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 10734 | 0.77 | 0.4143 |
Target: 5'- gGCGGCGGGGCGGcaacg-GCGGCGACg -3' miRNA: 3'- -CGUCGUCCUGCCacuagaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 71715 | 0.76 | 0.460303 |
Target: 5'- cGCAGCGGcGACGGUGggCgugGguGUGGCg -3' miRNA: 3'- -CGUCGUC-CUGCCACuaGa--CguCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 55351 | 0.75 | 0.497992 |
Target: 5'- gGCAGCAGGGcCGGguccacgUGGUgCcGCAGCAGCg -3' miRNA: 3'- -CGUCGUCCU-GCC-------ACUA-GaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 71914 | 0.74 | 0.559472 |
Target: 5'- cGCGGCGccGCGG-GcgCUGCAGCGGCg -3' miRNA: 3'- -CGUCGUccUGCCaCuaGACGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 110267 | 0.74 | 0.545139 |
Target: 5'- uGCAGCAGGGCGGcucguggcgggcgGA-CUGgCGGCGGCu -3' miRNA: 3'- -CGUCGUCCUGCCa------------CUaGAC-GUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 13845 | 0.74 | 0.569774 |
Target: 5'- gGCAGCGGGcgccCGGcgGGUagUGCAGCAGCu -3' miRNA: 3'- -CGUCGUCCu---GCCa-CUAg-ACGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 13128 | 0.74 | 0.559472 |
Target: 5'- uGCGGCucGGGCGGUGGUgCcGCcGGCGACa -3' miRNA: 3'- -CGUCGu-CCUGCCACUA-GaCG-UCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 112003 | 0.73 | 0.6323 |
Target: 5'- cGCGGgGGGcugGCGGgGAUCUGCGGUcGCu -3' miRNA: 3'- -CGUCgUCC---UGCCaCUAGACGUCGuUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 93101 | 0.73 | 0.600929 |
Target: 5'- cCAGCGGGcgcuucGCGGUG-UCggGCGGCGGCg -3' miRNA: 3'- cGUCGUCC------UGCCACuAGa-CGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 80456 | 0.73 | 0.611373 |
Target: 5'- aGgAGCuGGGCaaGGUGGUC-GCGGCGACg -3' miRNA: 3'- -CgUCGuCCUG--CCACUAGaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 143962 | 0.73 | 0.6323 |
Target: 5'- cGCGGCGGGcucauguCGGUGGcgCUGCAGacCGACa -3' miRNA: 3'- -CGUCGUCCu------GCCACUa-GACGUC--GUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 44191 | 0.72 | 0.694794 |
Target: 5'- uGCGGCGGG--GGUGGggcUCgGCGGCGGCg -3' miRNA: 3'- -CGUCGUCCugCCACU---AGaCGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 140682 | 0.72 | 0.694794 |
Target: 5'- cCGGCAGGGCGG-GGUCgaccGCGGCc-- -3' miRNA: 3'- cGUCGUCCUGCCaCUAGa---CGUCGuug -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 16172 | 0.72 | 0.673042 |
Target: 5'- cGCGGCGGuggaguuGGCGGUGGUggaguugGCGGCGGCg -3' miRNA: 3'- -CGUCGUC-------CUGCCACUAga-----CGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 38741 | 0.72 | 0.663668 |
Target: 5'- gGCGGCucucucGGGGCGGgGGUCggucGUAGCGGCg -3' miRNA: 3'- -CGUCG------UCCUGCCaCUAGa---CGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 7840 | 0.72 | 0.663668 |
Target: 5'- gGCGGCucucucGGGGCGGgGGUCggucGUAGCGGCg -3' miRNA: 3'- -CGUCG------UCCUGCCaCUAGa---CGUCGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 70915 | 0.71 | 0.75334 |
Target: 5'- cGCGGgGGGGCGGgagguggGAUCUGCcgucgggggaccGCAACc -3' miRNA: 3'- -CGUCgUCCUGCCa------CUAGACGu-----------CGUUG- -5' |
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21389 | 3' | -54.2 | NC_004812.1 | + | 20418 | 0.71 | 0.755303 |
Target: 5'- uGCGGCAGGcgcuGCGGUcGAUgUGguGCGc- -3' miRNA: 3'- -CGUCGUCC----UGCCA-CUAgACguCGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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