miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 156453 0.68 0.862035
Target:  5'- cGCGGCGGGccGCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCC--UGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 153994 0.69 0.85733
Target:  5'- cGgGGCGGGGCcggcgcggagaguccGGUGccGUCgGCGGCGGCg -3'
miRNA:   3'- -CgUCGUCCUG---------------CCAC--UAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 149007 0.68 0.862035
Target:  5'- uGCGGCGGGcCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCuGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 148263 0.68 0.884362
Target:  5'- cGCGGUGGGGCGGccGcgCccgGCAGCGcgGCg -3'
miRNA:   3'- -CGUCGUCCUGCCa-CuaGa--CGUCGU--UG- -5'
21389 3' -54.2 NC_004812.1 + 147501 0.66 0.933385
Target:  5'- gGCGGCgaggGGGACGGcGAg--GCGGcCGGCg -3'
miRNA:   3'- -CGUCG----UCCUGCCaCUagaCGUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 147410 0.66 0.927585
Target:  5'- cGCGGaacaGGGGuCGGUGuucgagcggcaggGUCUGUAGguGCg -3'
miRNA:   3'- -CGUCg---UCCU-GCCAC-------------UAGACGUCguUG- -5'
21389 3' -54.2 NC_004812.1 + 147127 0.67 0.898086
Target:  5'- cCGGgGGGACGGgcgugCUGCucGCAGCg -3'
miRNA:   3'- cGUCgUCCUGCCacua-GACGu-CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 146134 0.66 0.928125
Target:  5'- gGCGGCAGGAagagaaCGGcaccuUCgagaGCGGCGACg -3'
miRNA:   3'- -CGUCGUCCU------GCCacu--AGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 143962 0.73 0.6323
Target:  5'- cGCGGCGGGcucauguCGGUGGcgCUGCAGacCGACa -3'
miRNA:   3'- -CGUCGUCCu------GCCACUa-GACGUC--GUUG- -5'
21389 3' -54.2 NC_004812.1 + 140682 0.72 0.694794
Target:  5'- cCGGCAGGGCGG-GGUCgaccGCGGCc-- -3'
miRNA:   3'- cGUCGUCCUGCCaCUAGa---CGUCGuug -5'
21389 3' -54.2 NC_004812.1 + 139532 0.71 0.705073
Target:  5'- --cGguGGGCGGacUGGUC-GCGGCAGCg -3'
miRNA:   3'- cguCguCCUGCC--ACUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 139281 0.66 0.933385
Target:  5'- gGCAGC-GGACGc-GAUCgaagggcgaggUGCGGCGGCc -3'
miRNA:   3'- -CGUCGuCCUGCcaCUAG-----------ACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 138286 0.71 0.705073
Target:  5'- cGCccuGCGGG-CGGUGGUC-GCGGCGGg -3'
miRNA:   3'- -CGu--CGUCCuGCCACUAGaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 138102 0.67 0.898086
Target:  5'- -uGGCGGGAUGG-GGUCUcCGGCucGACg -3'
miRNA:   3'- cgUCGUCCUGCCaCUAGAcGUCG--UUG- -5'
21389 3' -54.2 NC_004812.1 + 137173 0.68 0.869702
Target:  5'- aGguGCGGGA-GGcGGUcCUGCGGCcGCg -3'
miRNA:   3'- -CguCGUCCUgCCaCUA-GACGUCGuUG- -5'
21389 3' -54.2 NC_004812.1 + 135739 0.66 0.943157
Target:  5'- cCGGCGGGcgacaucgaGGUGGUCgcccUGCAGcCGACa -3'
miRNA:   3'- cGUCGUCCug-------CCACUAG----ACGUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 134373 0.66 0.947673
Target:  5'- aGCGGUGGGAacugGAUCUGCcguacauGCGGCg -3'
miRNA:   3'- -CGUCGUCCUgccaCUAGACGu------CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 133483 1.11 0.002762
Target:  5'- aGCAGCAGGACGGUGAUCUGCAGCAACc -3'
miRNA:   3'- -CGUCGUCCUGCCACUAGACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 133211 0.68 0.869702
Target:  5'- aCAGCgggaaguugAGGGCGGcGAUC-GUGGCGACg -3'
miRNA:   3'- cGUCG---------UCCUGCCaCUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129815 0.66 0.943157
Target:  5'- cGCcGCAGGcUGGUGAugaggaagcccuUCUGCgcgcggucguAGCGGCg -3'
miRNA:   3'- -CGuCGUCCuGCCACU------------AGACG----------UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.