miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 129751 0.68 0.869702
Target:  5'- gGCGGCGGcGGCGGcgGcgCccgccGCGGCGGCg -3'
miRNA:   3'- -CGUCGUC-CUGCCa-CuaGa----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129705 0.66 0.933385
Target:  5'- cCGGCGGGaACGGcggGGaCcGCGGCGGCg -3'
miRNA:   3'- cGUCGUCC-UGCCa--CUaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129529 0.71 0.725427
Target:  5'- cGCGGCAGG-CcGUGAggcacUCgGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCuGcCACU-----AGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129428 0.68 0.891343
Target:  5'- gGCGGCGGGGCc--GcgCgGCGGCGGCa -3'
miRNA:   3'- -CGUCGUCCUGccaCuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129178 0.66 0.947673
Target:  5'- cCAGCAGGGggcgcaggcucUGGUucuggaagagcaGGUCgGCGGCGGCg -3'
miRNA:   3'- cGUCGUCCU-----------GCCA------------CUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 128607 0.66 0.931833
Target:  5'- -gGGCGGGGCGGgggaGGcgccgccgagcuccUCgccggGCAGCGGCg -3'
miRNA:   3'- cgUCGUCCUGCCa---CU--------------AGa----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 128047 0.68 0.884362
Target:  5'- gGCAGCAcGGcGCGGcGGUaCUcgcGCGGCGGCa -3'
miRNA:   3'- -CGUCGU-CC-UGCCaCUA-GA---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 127009 0.66 0.943157
Target:  5'- -gGGUAGGGCGGgggGGgg-GgAGCAACg -3'
miRNA:   3'- cgUCGUCCUGCCa--CUagaCgUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 126750 0.67 0.922614
Target:  5'- -uGGC-GGACGGcuuGUCUGCGGCuGACu -3'
miRNA:   3'- cgUCGuCCUGCCac-UAGACGUCG-UUG- -5'
21389 3' -54.2 NC_004812.1 + 125418 0.67 0.916854
Target:  5'- cCAGCGGGACGacc--CUGCGGaCGACg -3'
miRNA:   3'- cGUCGUCCUGCcacuaGACGUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 124238 0.7 0.802693
Target:  5'- gGCGGCGGGccugGCGGgggGcgCgcGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCC----UGCCa--CuaGa-CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 123093 0.69 0.85733
Target:  5'- cGgGGCGGGGCcggcgcggagaguccGGUGccGUCgGCGGCGGCg -3'
miRNA:   3'- -CgUCGUCCUG---------------CCAC--UAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 121875 0.7 0.793501
Target:  5'- cGCccCAGGACGGcGAUCgGCGGCuGCc -3'
miRNA:   3'- -CGucGUCCUGCCaCUAGaCGUCGuUG- -5'
21389 3' -54.2 NC_004812.1 + 117362 0.68 0.884362
Target:  5'- cGCGGUGGGGCGGccGcgCccgGCAGCGcgGCg -3'
miRNA:   3'- -CGUCGUCCUGCCa-CuaGa--CGUCGU--UG- -5'
21389 3' -54.2 NC_004812.1 + 116442 0.68 0.874196
Target:  5'- gGCcuGCGGGGCGGccgucgcgcugugGGUC-GCGGCGGCg -3'
miRNA:   3'- -CGu-CGUCCUGCCa------------CUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 115594 0.66 0.933385
Target:  5'- cGCGGCGGG-CGGcGggCUGUAGgGGg -3'
miRNA:   3'- -CGUCGUCCuGCCaCuaGACGUCgUUg -5'
21389 3' -54.2 NC_004812.1 + 112003 0.73 0.6323
Target:  5'- cGCGGgGGGcugGCGGgGAUCUGCGGUcGCu -3'
miRNA:   3'- -CGUCgUCC---UGCCaCUAGACGUCGuUG- -5'
21389 3' -54.2 NC_004812.1 + 111463 0.68 0.884362
Target:  5'- cCAGgAGG-CGGUGAaCUGCcucGCGGCg -3'
miRNA:   3'- cGUCgUCCuGCCACUaGACGu--CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 110267 0.74 0.545139
Target:  5'- uGCAGCAGGGCGGcucguggcgggcgGA-CUGgCGGCGGCu -3'
miRNA:   3'- -CGUCGUCCUGCCa------------CUaGAC-GUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 109109 0.68 0.884362
Target:  5'- gGUGGCGGcGAcgucccCGGUGAUCUucugagGCAGCAGg -3'
miRNA:   3'- -CGUCGUC-CU------GCCACUAGA------CGUCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.